Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MPG41_RS04965 Genome accession   NZ_CP094109
Coordinates   1055302..1056477 (+) Length   391 a.a.
NCBI ID   WP_245067413.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe072     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1050302..1061477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG41_RS04940 (MPG41_04940) - 1050631..1051527 (+) 897 WP_245067407.1 response regulator -
  MPG41_RS04945 (MPG41_04945) - 1051752..1052618 (+) 867 WP_245068574.1 5'-3' exonuclease -
  MPG41_RS04950 (MPG41_04950) - 1052640..1053890 (-) 1251 WP_245067409.1 outer membrane family protein -
  MPG41_RS04955 (MPG41_04955) - 1054058..1054924 (+) 867 WP_245067411.1 DnaJ C-terminal domain-containing protein -
  MPG41_RS04960 (MPG41_04960) - 1054934..1055305 (+) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  MPG41_RS04965 (MPG41_04965) rarA 1055302..1056477 (+) 1176 WP_245067413.1 replication-associated recombination protein A Machinery gene
  MPG41_RS04970 (MPG41_04970) fur 1056637..1057089 (+) 453 WP_000824985.1 ferric iron uptake transcriptional regulator -
  MPG41_RS04975 (MPG41_04975) - 1057109..1057606 (-) 498 WP_245067415.1 DUF2147 domain-containing protein -
  MPG41_RS04980 (MPG41_04980) - 1057603..1058139 (-) 537 WP_245067417.1 YhcH/YjgK/YiaL family protein -
  MPG41_RS04985 (MPG41_04985) fliY 1058168..1059031 (-) 864 WP_245067418.1 flagellar motor switch protein FliY -
  MPG41_RS04990 (MPG41_04990) fliM 1059035..1060099 (-) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  MPG41_RS04995 (MPG41_04995) - 1060092..1060868 (-) 777 WP_000602379.1 RNA polymerase sigma factor FliA -
  MPG41_RS05000 (MPG41_05000) - 1060846..1061160 (-) 315 WP_000867999.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43921.55 Da        Isoelectric Point: 8.1219

>NTDB_id=575087 MPG41_RS04965 WP_245067413.1 1055302..1056477(+) (rarA) [Helicobacter pylori strain Hpfe072]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCTK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSPNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=575087 MPG41_RS04965 WP_245067413.1 1055302..1056477(+) (rarA) [Helicobacter pylori strain Hpfe072]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTCAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAACTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACTCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATTTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACTCCCCTAAAAAAGAGCGATTTAGACAAGCTTTGCACTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCTAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAGATAGAAGATCCTATCACTTTAGAAACGCTGCAATCCTTACGGCCTCATA
GCCCAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGCGCTTTAATCAAGTCTTTAAGGGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGTTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTAGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTATTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.136

100

0.391