Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KM392_RS10560 Genome accession   NZ_CP076219
Coordinates   2005124..2005462 (+) Length   112 a.a.
NCBI ID   WP_033648511.1    Uniprot ID   -
Organism   Bacillus anthracis strain AF039     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2000124..2010462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KM392_RS10535 (KM392_10520) - 2000403..2001149 (-) 747 WP_000499686.1 hypothetical protein -
  KM392_RS10540 (KM392_10525) - 2001259..2001906 (+) 648 WP_000165939.1 HD domain-containing protein -
  KM392_RS10545 (KM392_10530) - 2001903..2003798 (+) 1896 WP_000783212.1 ABC-F family ATP-binding cassette domain-containing protein -
  KM392_RS10550 (KM392_10535) - 2003874..2004605 (+) 732 WP_001260645.1 Bax inhibitor-1/YccA family protein -
  KM392_RS10555 (KM392_10540) - 2004711..2004965 (+) 255 WP_000975126.1 DUF4318 domain-containing protein -
  KM392_RS10560 (KM392_10545) ssb 2005124..2005462 (+) 339 WP_033648511.1 single-stranded DNA-binding protein Machinery gene
  KM392_RS10565 (KM392_10550) - 2005488..2006078 (-) 591 WP_000943168.1 TetR/AcrR family transcriptional regulator -
  KM392_RS10570 - 2006180..2007313 (-) 1134 Protein_2022 FAD-dependent oxidoreductase -
  KM392_RS10575 (KM392_10575) - 2007572..2008699 (+) 1128 WP_000692577.1 conserved virulence factor C family protein -
  KM392_RS10580 (KM392_10580) - 2008703..2009086 (+) 384 WP_000634868.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  KM392_RS10585 (KM392_10585) - 2009170..2009604 (+) 435 WP_000063712.1 BrxA/BrxB family bacilliredoxin -
  KM392_RS10590 (KM392_10590) - 2009654..2010430 (+) 777 WP_000637445.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12894.72 Da        Isoelectric Point: 8.6813

>NTDB_id=573710 KM392_RS10560 WP_033648511.1 2005124..2005462(+) (ssb) [Bacillus anthracis strain AF039]
MMNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRNSLGEQQVDFIDCVVWRKSAENVTEYCTKGSLVGITGRIHTR
NYEDDQGKRIYITEVVIESITFLERRREGASQ

Nucleotide


Download         Length: 339 bp        

>NTDB_id=573710 KM392_RS10560 WP_033648511.1 2005124..2005462(+) (ssb) [Bacillus anthracis strain AF039]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAGCAAGGCGTCGCGTATGC
ACGAGTATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTAGATTTTATTGATTGTGTCGTTT
GGCGAAAATCGGCTGAGAATGTAACTGAATATTGTACGAAAGGGTCTCTTGTTGGAATTACCGGACGTATTCATACGAGG
AATTACGAGGATGATCAAGGAAAGAGAATATATATAACGGAAGTCGTGATAGAGAGCATTACATTTTTGGAGAGAAGGCG
CGAAGGTGCATCGCAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

52.101

100

0.554
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

94.643

0.545
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.442

100

0.509
  ssbB Lactococcus lactis subsp. cremoris KW2

47.619

93.75

0.446
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.545

98.214

0.437
  ssbA Streptococcus mutans UA159

42.727

98.214

0.42
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.818

98.214

0.411
  ssbB/cilA Streptococcus mitis NCTC 12261

41.818

98.214

0.411
  ssbB/cilA Streptococcus pneumoniae Rx1

40.909

98.214

0.402
  ssbB/cilA Streptococcus pneumoniae D39

40.909

98.214

0.402
  ssbB/cilA Streptococcus pneumoniae R6

40.909

98.214

0.402
  ssbB/cilA Streptococcus mitis SK321

40.909

98.214

0.402