Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   KH238_RS15515 Genome accession   NZ_CP076045
Coordinates   3205282..3205611 (-) Length   109 a.a.
NCBI ID   WP_032867426.1    Uniprot ID   -
Organism   Bacillus velezensis strain VCN56     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3200282..3210611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH238_RS15500 (KH238_15500) - 3200549..3203323 (+) 2775 WP_032867432.1 DEAD/DEAH box helicase -
  KH238_RS15505 (KH238_15505) - 3203436..3204293 (-) 858 WP_032867429.1 Cof-type HAD-IIB family hydrolase -
  KH238_RS15510 (KH238_15510) - 3204290..3205072 (-) 783 WP_015418394.1 DeoR/GlpR family DNA-binding transcription regulator -
  KH238_RS15515 (KH238_15515) ssbB 3205282..3205611 (-) 330 WP_032867426.1 single-stranded DNA-binding protein Machinery gene
  KH238_RS15520 (KH238_15520) - 3205709..3206062 (-) 354 WP_003151247.1 hypothetical protein -
  KH238_RS15525 (KH238_15525) - 3206235..3206645 (+) 411 WP_012118638.1 YwpF-like family protein -
  KH238_RS15530 (KH238_15530) mscL 3206693..3207088 (-) 396 WP_015418395.1 large conductance mechanosensitive channel protein MscL -
  KH238_RS15535 (KH238_15535) fabZ 3207144..3207569 (-) 426 WP_003151242.1 3-hydroxyacyl-ACP dehydratase FabZ -
  KH238_RS15540 (KH238_15540) - 3207765..3208829 (+) 1065 WP_007407559.1 tetratricopeptide repeat protein -
  KH238_RS15545 (KH238_15545) - 3208847..3209668 (-) 822 WP_032867498.1 flagellar hook-basal body protein -
  KH238_RS15550 (KH238_15550) - 3209693..3210490 (-) 798 WP_007614310.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 12317.20 Da        Isoelectric Point: 9.9016

>NTDB_id=571639 KH238_RS15515 WP_032867426.1 3205282..3205611(-) (ssbB) [Bacillus velezensis strain VCN56]
MFNHVMLVGRLTKDPELRFTAAGIPVAHITLAVNRNFKSASTDFVNCTIWRKNAENTSLYCQKGSMVGVSGRIQTRSYEK
TDGVKVYVTEVMADTVRFMDQKRKEPLAE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=571639 KH238_RS15515 WP_032867426.1 3205282..3205611(-) (ssbB) [Bacillus velezensis strain VCN56]
TTGTTTAACCACGTTATGCTTGTCGGCCGGCTGACGAAAGACCCGGAGCTCCGTTTTACAGCAGCGGGCATTCCCGTCGC
ACATATTACGTTGGCGGTAAACCGCAATTTTAAAAGCGCGTCAACCGACTTCGTCAACTGCACCATCTGGAGAAAAAACG
CTGAAAATACGTCATTGTACTGCCAAAAAGGGTCAATGGTCGGTGTAAGCGGCAGAATCCAGACGAGAAGCTATGAAAAG
ACAGACGGCGTAAAAGTTTATGTGACCGAGGTCATGGCTGATACCGTTCGGTTTATGGATCAAAAACGGAAAGAGCCGCT
GGCTGAATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

73.451

100

0.761
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.717

97.248

0.532
  ssb Latilactobacillus sakei subsp. sakei 23K

50

97.248

0.486
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.133

100

0.468
  ssbA Streptococcus mutans UA159

39.823

100

0.413
  ssbB/cilA Streptococcus mitis NCTC 12261

38.938

100

0.404
  ssbB/cilA Streptococcus pneumoniae TIGR4

38.938

100

0.404
  ssbB/cilA Streptococcus pneumoniae Rx1

38.053

100

0.394
  ssbB/cilA Streptococcus pneumoniae D39

38.053

100

0.394
  ssbB/cilA Streptococcus pneumoniae R6

38.053

100

0.394
  ssbB/cilA Streptococcus mitis SK321

38.053

100

0.394
  ssbB Lactococcus lactis subsp. cremoris KW2

35.714

100

0.367