Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   KI612_RS00090 Genome accession   NZ_CP075188
Coordinates   23604..24680 (-) Length   358 a.a.
NCBI ID   WP_226441794.1    Uniprot ID   -
Organism   Quatrionicoccus australiensis strain D9     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 18604..29680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI612_RS00075 (KI612_00075) - 18859..19773 (+) 915 WP_226441791.1 hydrogen peroxide-inducible genes activator -
  KI612_RS00080 (KI612_00080) - 19838..20920 (+) 1083 WP_226441792.1 GNAT family N-acetyltransferase -
  KI612_RS00085 (KI612_00085) - 21008..23524 (-) 2517 WP_226441793.1 DNA topoisomerase III -
  KI612_RS00090 (KI612_00090) dprA 23604..24680 (-) 1077 WP_226441794.1 DNA-processing protein DprA Machinery gene
  KI612_RS00095 (KI612_00095) - 24677..25711 (-) 1035 WP_226441795.1 LysM peptidoglycan-binding domain-containing protein -
  KI612_RS00100 (KI612_00100) def 25854..26357 (+) 504 WP_226441796.1 peptide deformylase -
  KI612_RS00105 (KI612_00105) fmt 26354..27277 (+) 924 WP_226441797.1 methionyl-tRNA formyltransferase -
  KI612_RS00110 (KI612_00110) speD 27314..27694 (-) 381 WP_226441798.1 adenosylmethionine decarboxylase -
  KI612_RS00115 (KI612_00115) - 27704..28585 (-) 882 WP_226441799.1 S1/P1 nuclease -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 37839.20 Da        Isoelectric Point: 5.2192

>NTDB_id=568497 KI612_RS00090 WP_226441794.1 23604..24680(-) (dprA) [Quatrionicoccus australiensis strain D9]
MKTTKGLAAWLRLTLIPGIGGERQRKLLAAFGLPEGIFAAGRLAARSVIGETADLLFDFDPGEAVDRSLHWAEDPEQHIL
TLADEAYPAALLEIADPPNVLYLRGNPALLQQPGLAIVGSRNATPQGLQTAHGFARTLAGQGLTIISGLALGIDAAAHQG
ALAANGNTIAVIGTGADRIYPARNKELALQIAEQGLIVSEFPLGTPVLAANFPRRNRIISGLSRGVLVVEAAPESGSLIT
ARLAGEQGREVFAIPGSIHSPLARGCHKLIRQGAKLVETADDILEELGNLTANNQLPDEAPHRTEDPLLIALGHDPCSLD
QLAERTGYSTEQLLTELLTLELSGVLATLPGNRYQRLN

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=568497 KI612_RS00090 WP_226441794.1 23604..24680(-) (dprA) [Quatrionicoccus australiensis strain D9]
GTGAAAACAACCAAAGGTCTGGCCGCCTGGCTGCGGCTGACCCTGATCCCCGGAATCGGCGGCGAGAGGCAGAGAAAGCT
TCTCGCCGCTTTTGGTTTACCGGAAGGAATTTTCGCCGCCGGCCGGCTGGCTGCGCGCTCGGTCATCGGCGAAACAGCCG
ACCTGCTGTTTGATTTTGACCCCGGCGAAGCCGTCGACCGTAGCCTGCACTGGGCGGAAGACCCCGAGCAGCACATCCTG
ACCCTGGCCGACGAAGCCTACCCCGCCGCCCTGCTGGAAATTGCCGACCCGCCCAATGTGCTCTATCTGCGCGGCAACCC
GGCGTTGTTGCAACAACCTGGCCTGGCGATCGTCGGCAGTCGCAATGCAACGCCACAGGGCCTGCAGACGGCCCACGGCT
TTGCCCGGACGCTTGCCGGACAAGGCTTGACCATCATCAGTGGCCTGGCACTCGGCATCGACGCGGCAGCTCATCAAGGT
GCGCTGGCCGCCAACGGAAATACGATTGCCGTCATCGGCACCGGCGCCGACCGAATCTACCCCGCCCGCAACAAGGAACT
GGCCCTGCAGATCGCCGAACAGGGCCTGATTGTTTCCGAGTTTCCACTCGGTACACCGGTGCTGGCGGCCAATTTTCCCC
GCCGCAACCGGATCATTTCCGGCCTGTCGCGCGGCGTTCTGGTCGTCGAAGCCGCACCGGAAAGCGGTTCGCTGATCACG
GCGCGCCTGGCCGGCGAGCAGGGACGCGAAGTTTTTGCCATTCCCGGCTCCATCCACTCCCCGCTTGCCCGGGGCTGCCA
CAAACTGATCAGGCAAGGCGCCAAGCTGGTCGAAACCGCTGACGACATACTGGAAGAACTGGGCAACCTGACGGCGAACA
ATCAGCTTCCGGATGAGGCCCCCCATCGGACCGAAGATCCCCTGCTCATCGCCCTTGGCCACGATCCGTGCAGCCTCGAC
CAACTGGCCGAACGGACCGGTTACAGCACCGAACAACTGCTCACTGAATTGCTGACGCTGGAGCTCTCCGGCGTGCTCGC
CACCCTGCCCGGCAACCGCTACCAGCGCCTCAACTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)

DprA winged helix domain (DprA_WH)

(297-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae MS11

45.361

100

0.492
  dprA Neisseria meningitidis strain C311

44.757

100

0.489
  dprA Neisseria meningitidis MC58

44.757

100

0.489
  dprA Neisseria gonorrhoeae strain FA1090

45.103

100

0.489
  dprA Vibrio campbellii strain DS40M4

46.133

100

0.466
  dprA Glaesserella parasuis strain SC1401

42.663

100

0.439
  dprA Vibrio cholerae strain A1552

41.962

100

0.43
  dprA Legionella pneumophila strain ERS1305867

50.658

84.916

0.43
  dprA Acinetobacter baylyi ADP1

42.577

99.721

0.425
  dprA Acinetobacter baumannii D1279779

43.103

97.207

0.419
  dprA Acinetobacter baumannii strain A118

42.529

97.207

0.413
  dprA Haemophilus influenzae Rd KW20

41.916

93.296

0.391