Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   KIP81_RS00695 Genome accession   NZ_CP075172
Coordinates   103697..104638 (+) Length   313 a.a.
NCBI ID   WP_027968018.1    Uniprot ID   -
Organism   Streptococcus equinus strain SheepZ001     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 98697..109638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP81_RS00685 (KIP81_00685) rpoC 99454..103092 (+) 3639 WP_243602940.1 DNA-directed RNA polymerase subunit beta' -
  KIP81_RS00690 (KIP81_00690) - 103259..103627 (+) 369 WP_021141429.1 DUF1033 family protein -
  KIP81_RS00695 (KIP81_00695) comYA 103697..104638 (+) 942 WP_027968018.1 competence type IV pilus ATPase ComGA Machinery gene
  KIP81_RS00700 (KIP81_00700) comYB 104562..105605 (+) 1044 WP_243603363.1 competence type IV pilus assembly protein ComGB Machinery gene
  KIP81_RS00705 (KIP81_00705) comGC/cglC 105605..105898 (+) 294 WP_033151921.1 competence type IV pilus major pilin ComGC Machinery gene
  KIP81_RS00710 (KIP81_00710) comGD 105882..106313 (+) 432 WP_243602941.1 competence type IV pilus minor pilin ComGD -
  KIP81_RS00715 (KIP81_00715) comGE 106267..106560 (+) 294 WP_243602942.1 competence type IV pilus minor pilin ComGE -
  KIP81_RS00720 (KIP81_00720) comYF 106544..106981 (+) 438 WP_003067903.1 competence type IV pilus minor pilin ComGF Machinery gene
  KIP81_RS00725 (KIP81_00725) comGG 106968..107303 (+) 336 WP_243602943.1 competence type IV pilus minor pilin ComGG -
  KIP81_RS00730 (KIP81_00730) comYH 107357..108313 (+) 957 WP_024344497.1 class I SAM-dependent methyltransferase Machinery gene
  KIP81_RS00735 (KIP81_00735) - 108367..109566 (+) 1200 WP_074630168.1 acetate kinase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 35736.86 Da        Isoelectric Point: 5.7732

>NTDB_id=568221 KIP81_RS00695 WP_027968018.1 103697..104638(+) (comYA) [Streptococcus equinus strain SheepZ001]
MIQEKAKQLIRDAVEKNAQDIYIIPKAENYEIYQRIGEKRQFIQEVATDEMTSLISHFKFVAGMNVGEKRRSQLGSCDYA
FADDEEISLRLSSVGDYRGRESLVIRLLYSGRHDLQYWFDGMRNILEAIDSRGLYLFSGPVGSGKTTLMYQLVREKFPGK
QVITIEDPVEIKQDNMLQLQLNDEIGMTYDNLIKLSLRHRPDILIIGEIRDSETARAVIRASLTGVLVFSTIHAKSIPGV
YARLLELGVSRQELENSLRAIVYQRLIGGGGVVDFAKRDFEQYPPTRWNEQIDSLARDGHISFEEAKIEKIAL

Nucleotide


Download         Length: 942 bp        

>NTDB_id=568221 KIP81_RS00695 WP_027968018.1 103697..104638(+) (comYA) [Streptococcus equinus strain SheepZ001]
ATGATTCAGGAAAAAGCAAAGCAGCTTATTAGAGATGCGGTTGAAAAGAATGCTCAGGATATCTATATTATTCCAAAGGC
AGAAAACTATGAGATTTATCAACGAATTGGTGAGAAGCGCCAGTTTATTCAAGAAGTTGCTACTGATGAAATGACAAGCT
TGATTAGCCACTTTAAATTTGTAGCTGGGATGAATGTTGGTGAGAAGCGTCGTAGTCAGCTTGGTTCTTGTGACTATGCT
TTTGCAGATGATGAGGAGATTTCACTGCGCTTGTCTAGTGTGGGTGATTATCGTGGGCGTGAAAGTCTGGTCATTAGGCT
CCTTTATTCAGGTCGTCATGATTTGCAGTATTGGTTTGATGGAATGAGAAATATTTTAGAGGCTATTGACAGCAGGGGAC
TTTACCTTTTTTCCGGGCCGGTAGGGAGTGGGAAAACCACTCTCATGTATCAATTAGTTCGTGAAAAATTTCCTGGAAAA
CAGGTGATTACGATTGAAGACCCTGTTGAGATAAAACAAGACAATATGTTGCAATTGCAGTTAAATGATGAAATCGGGAT
GACTTATGATAATCTTATCAAGCTCTCGCTTCGTCATAGACCTGATATTTTGATTATTGGTGAGATTCGTGATAGTGAGA
CAGCGCGTGCGGTTATTAGAGCTAGTCTGACAGGAGTCCTTGTTTTTTCAACCATTCATGCGAAAAGTATTCCAGGTGTT
TATGCTAGGTTATTAGAATTGGGTGTAAGTAGGCAGGAACTTGAAAATAGCTTGCGCGCTATTGTTTATCAACGATTAAT
TGGTGGTGGAGGTGTAGTTGATTTTGCCAAAAGAGATTTTGAGCAGTATCCCCCAACAAGGTGGAATGAGCAAATTGATA
GCCTTGCTCGAGACGGACATATCAGTTTTGAAGAGGCAAAAATCGAAAAAATTGCCCTTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA159

71.061

99.361

0.706
  comYA Streptococcus mutans UA140

70.74

99.361

0.703
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

68.71

99.042

0.681
  comYA Streptococcus gordonii str. Challis substr. CH1

65.916

99.361

0.655
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

64.103

99.681

0.639
  comGA/cglA/cilD Streptococcus pneumoniae D39

64.103

99.681

0.639
  comGA/cglA/cilD Streptococcus pneumoniae R6

64.103

99.681

0.639
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

64.103

99.681

0.639
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

64.103

99.681

0.639
  comGA Lactococcus lactis subsp. cremoris KW2

54.952

100

0.55
  comGA Latilactobacillus sakei subsp. sakei 23K

42.701

87.54

0.374