Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   KIP81_RS00730 Genome accession   NZ_CP075172
Coordinates   107357..108313 (+) Length   318 a.a.
NCBI ID   WP_024344497.1    Uniprot ID   A0A239RCI2
Organism   Streptococcus equinus strain SheepZ001     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 102357..113313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP81_RS00690 (KIP81_00690) - 103259..103627 (+) 369 WP_021141429.1 DUF1033 family protein -
  KIP81_RS00695 (KIP81_00695) comYA 103697..104638 (+) 942 WP_027968018.1 competence type IV pilus ATPase ComGA Machinery gene
  KIP81_RS00700 (KIP81_00700) comYB 104562..105605 (+) 1044 WP_243603363.1 competence type IV pilus assembly protein ComGB Machinery gene
  KIP81_RS00705 (KIP81_00705) comGC/cglC 105605..105898 (+) 294 WP_033151921.1 competence type IV pilus major pilin ComGC Machinery gene
  KIP81_RS00710 (KIP81_00710) comGD 105882..106313 (+) 432 WP_243602941.1 competence type IV pilus minor pilin ComGD -
  KIP81_RS00715 (KIP81_00715) comGE 106267..106560 (+) 294 WP_243602942.1 competence type IV pilus minor pilin ComGE -
  KIP81_RS00720 (KIP81_00720) comYF 106544..106981 (+) 438 WP_003067903.1 competence type IV pilus minor pilin ComGF Machinery gene
  KIP81_RS00725 (KIP81_00725) comGG 106968..107303 (+) 336 WP_243602943.1 competence type IV pilus minor pilin ComGG -
  KIP81_RS00730 (KIP81_00730) comYH 107357..108313 (+) 957 WP_024344497.1 class I SAM-dependent methyltransferase Machinery gene
  KIP81_RS00735 (KIP81_00735) - 108367..109566 (+) 1200 WP_074630168.1 acetate kinase -
  KIP81_RS00740 (KIP81_00740) - 109724..109921 (+) 198 WP_003067896.1 helix-turn-helix transcriptional regulator -
  KIP81_RS00745 (KIP81_00745) - 109977..110429 (+) 453 WP_243602944.1 ABC transporter permease -
  KIP81_RS00750 (KIP81_00750) - 110441..111076 (+) 636 WP_074630166.1 type II CAAX endopeptidase family protein -
  KIP81_RS00755 (KIP81_00755) proC 111128..111898 (-) 771 WP_045798324.1 pyrroline-5-carboxylate reductase -
  KIP81_RS00760 (KIP81_00760) pepA 111960..113027 (-) 1068 WP_074566991.1 glutamyl aminopeptidase -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35783.86 Da        Isoelectric Point: 4.4780

>NTDB_id=568225 KIP81_RS00730 WP_024344497.1 107357..108313(+) (comYH) [Streptococcus equinus strain SheepZ001]
MNFENIETAYGLILENIQLIENELKTHIYDALIEQNSFYLGAEGASEVVAANNEKLRQLNLTKEEWRRAFQFIFIKAAQT
EALQANHQFTPDAIGFILMFLIENLTASKELDVLEIGSGTGNLAQTLLNNSSKDLNYLGIEVDDLLIDLSASIAEVMDSK
AQFVQEDAVRPQILKESDVIISDLPVGFYPNDEIAKRYKVASSEGHTYAHHLLMEQSLKYLKKDGIAVFLAPVSLLTSKQ
SDLLKAWLKDYADVIAVITLPESIFGNAANAKSIFVLKKQAEHTPETFVYPLADLQSREVLTDFIDKFKKWNVENMIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=568225 KIP81_RS00730 WP_024344497.1 107357..108313(+) (comYH) [Streptococcus equinus strain SheepZ001]
ATGAATTTTGAAAATATCGAAACAGCCTATGGGTTGATTCTTGAAAATATACAATTAATCGAAAATGAGTTGAAAACACA
CATTTACGATGCACTTATTGAACAAAACTCTTTTTATCTTGGTGCTGAAGGTGCTAGTGAAGTTGTAGCTGCAAATAATG
AGAAACTACGCCAACTTAACTTAACTAAGGAAGAATGGCGCCGTGCTTTTCAGTTTATCTTTATTAAAGCTGCGCAAACA
GAAGCTCTTCAGGCAAATCACCAATTTACACCTGATGCTATTGGCTTCATTTTAATGTTCCTCATTGAGAATTTGACAGC
TTCTAAGGAACTTGATGTTTTGGAAATCGGTAGCGGAACAGGTAACCTTGCCCAAACGTTGTTGAACAACTCATCTAAAG
ACCTAAACTATCTAGGTATTGAAGTTGATGATTTGTTGATTGACTTGTCAGCAAGTATCGCTGAAGTTATGGATTCTAAA
GCTCAATTCGTTCAAGAAGATGCTGTACGCCCACAGATTCTTAAGGAAAGTGATGTCATCATCAGTGACCTTCCAGTCGG
ATTCTATCCAAATGATGAAATTGCAAAACGTTACAAAGTAGCTAGCAGTGAAGGGCACACTTATGCGCATCATTTGTTGA
TGGAACAATCTCTTAAATATCTCAAAAAAGATGGCATTGCTGTCTTTTTAGCACCAGTTAGTCTTTTGACAAGTAAGCAA
AGTGACCTGTTGAAAGCATGGTTGAAGGATTATGCTGATGTGATTGCTGTGATTACTTTGCCAGAATCTATCTTTGGAAA
TGCAGCTAACGCGAAATCAATTTTTGTTTTGAAAAAACAAGCTGAACATACTCCAGAAACCTTTGTCTATCCACTTGCTG
ACTTGCAAAGTCGAGAAGTGTTGACAGACTTCATTGATAAATTTAAAAAATGGAATGTTGAAAATATGATTTTTTAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A239RCI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

68.987

99.371

0.686
  comYH Streptococcus mutans UA159

68.671

99.371

0.682