Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   KIP81_RS00700 Genome accession   NZ_CP075172
Coordinates   104562..105605 (+) Length   347 a.a.
NCBI ID   WP_243603363.1    Uniprot ID   -
Organism   Streptococcus equinus strain SheepZ001     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 99562..110605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP81_RS00690 (KIP81_00690) - 103259..103627 (+) 369 WP_021141429.1 DUF1033 family protein -
  KIP81_RS00695 (KIP81_00695) comYA 103697..104638 (+) 942 WP_027968018.1 competence type IV pilus ATPase ComGA Machinery gene
  KIP81_RS00700 (KIP81_00700) comYB 104562..105605 (+) 1044 WP_243603363.1 competence type IV pilus assembly protein ComGB Machinery gene
  KIP81_RS00705 (KIP81_00705) comGC/cglC 105605..105898 (+) 294 WP_033151921.1 competence type IV pilus major pilin ComGC Machinery gene
  KIP81_RS00710 (KIP81_00710) comGD 105882..106313 (+) 432 WP_243602941.1 competence type IV pilus minor pilin ComGD -
  KIP81_RS00715 (KIP81_00715) comGE 106267..106560 (+) 294 WP_243602942.1 competence type IV pilus minor pilin ComGE -
  KIP81_RS00720 (KIP81_00720) comYF 106544..106981 (+) 438 WP_003067903.1 competence type IV pilus minor pilin ComGF Machinery gene
  KIP81_RS00725 (KIP81_00725) comGG 106968..107303 (+) 336 WP_243602943.1 competence type IV pilus minor pilin ComGG -
  KIP81_RS00730 (KIP81_00730) comYH 107357..108313 (+) 957 WP_024344497.1 class I SAM-dependent methyltransferase Machinery gene
  KIP81_RS00735 (KIP81_00735) - 108367..109566 (+) 1200 WP_074630168.1 acetate kinase -
  KIP81_RS00740 (KIP81_00740) - 109724..109921 (+) 198 WP_003067896.1 helix-turn-helix transcriptional regulator -
  KIP81_RS00745 (KIP81_00745) - 109977..110429 (+) 453 WP_243602944.1 ABC transporter permease -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39718.10 Da        Isoelectric Point: 9.6794

>NTDB_id=568222 KIP81_RS00700 WP_243603363.1 104562..105605(+) (comYB) [Streptococcus equinus strain SheepZ001]
MSKLIALLETDISVLKRQKSKKLPFKKQQKVIQLFNNLFNSGFTLTEIVSFLRRSQLLQESYVNSMQESLLSGATLADMM
ARLGFSDTIVTQIALADVHGNCQQSLVKIDRYLASMSVVRKKLIEVATYPLILLSFLILIMLGLKNYLLPQLESQNFATQ
IIAHFPMIFLGSFVLLGLAVVLGFFYARRLSPIYLFSQISRLPIIGRFIRLYLTAYYAREWGNLIGQGIDLMEIVALMQH
QKSRLFQEIGKDMQQGLLSGQSFHQKVLDYPFFLRELSLMIEYGEVKSKLGQELDIYAEETWQTFFSQLTQATQLIQPLV
FIFVALIIVLIYVAMLLPMYQNMGGNF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=568222 KIP81_RS00700 WP_243603363.1 104562..105605(+) (comYB) [Streptococcus equinus strain SheepZ001]
ATGAGCAAATTGATAGCCTTGCTCGAGACGGACATATCAGTTTTGAAGAGGCAAAAATCGAAAAAATTGCCCTTTAAAAA
ACAACAGAAGGTCATTCAATTATTTAATAATTTGTTTAACAGTGGCTTTACTTTAACTGAGATAGTGTCTTTTTTGAGAC
GGAGTCAGTTATTGCAGGAATCATATGTGAATAGTATGCAGGAGTCCTTGCTGAGTGGCGCAACTTTAGCAGATATGATG
GCAAGGTTAGGCTTTTCAGACACGATTGTGACTCAGATTGCTTTGGCTGATGTTCATGGAAATTGTCAGCAAAGTCTTGT
AAAAATCGATCGTTATTTGGCCAGTATGTCAGTTGTTCGAAAGAAATTGATTGAAGTGGCGACTTATCCTTTGATTTTAT
TAAGTTTTTTGATTTTGATAATGCTTGGCTTAAAAAATTATTTATTGCCGCAACTTGAAAGTCAAAATTTTGCTACTCAG
ATTATTGCCCATTTTCCAATGATTTTCCTGGGGAGCTTTGTGCTTTTAGGACTAGCAGTTGTTTTGGGATTTTTCTATGC
TAGGCGTTTATCACCAATCTATCTTTTTAGCCAGATTAGTCGCTTGCCGATAATAGGGCGATTCATTCGTCTTTATCTAA
CAGCTTATTATGCGCGTGAGTGGGGAAATCTTATTGGGCAAGGGATTGATTTGATGGAAATTGTAGCATTGATGCAACAT
CAAAAGTCGCGTCTTTTTCAAGAGATTGGCAAGGATATGCAGCAAGGTCTTTTGTCCGGTCAATCATTTCATCAAAAAGT
TCTAGATTATCCCTTCTTTTTGAGGGAACTGAGCCTGATGATTGAGTACGGAGAAGTCAAGTCCAAACTTGGTCAGGAGC
TTGATATCTATGCTGAGGAAACATGGCAGACTTTCTTTAGCCAATTAACTCAGGCAACACAGCTGATTCAACCGCTAGTT
TTTATCTTTGTTGCTTTAATTATTGTTTTAATCTACGTGGCAATGCTTTTGCCAATGTATCAAAATATGGGAGGAAATTT
TTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(33-150)

Type II secretion system (T2SS), protein F (T2SSF)

(218-338)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

62.281

98.559

0.614
  comYB Streptococcus mutans UA159

62.281

98.559

0.614
  comYB Streptococcus gordonii str. Challis substr. CH1

58.017

98.847

0.573
  comGB/cglB Streptococcus mitis NCTC 12261

58.16

97.118

0.565
  comGB/cglB Streptococcus mitis SK321

57.864

97.118

0.562
  comGB/cglB Streptococcus pneumoniae Rx1

57.567

97.118

0.559
  comGB/cglB Streptococcus pneumoniae D39

57.567

97.118

0.559
  comGB/cglB Streptococcus pneumoniae R6

57.567

97.118

0.559
  comGB/cglB Streptococcus pneumoniae TIGR4

57.567

97.118

0.559
  comGB Lactococcus lactis subsp. cremoris KW2

50.888

97.406

0.496