Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JRY14_RS13565 Genome accession   NZ_CP074714
Coordinates   2362162..2362497 (+) Length   111 a.a.
NCBI ID   WP_000982019.1    Uniprot ID   A0A9X5UY69
Organism   Bacillus thuringiensis strain B13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2362702..2368805 2362162..2362497 flank 205


Gene organization within MGE regions


Location: 2362162..2368805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRY14_RS13565 (JRY14_13525) ssbA 2362162..2362497 (+) 336 WP_000982019.1 single-stranded DNA-binding protein Machinery gene
  JRY14_RS13570 (JRY14_13530) - 2362702..2364132 (-) 1431 WP_001056973.1 IS4 family transposase -
  JRY14_RS13575 (JRY14_13535) - 2364330..2365766 (+) 1437 WP_062804561.1 IS4 family transposase -
  JRY14_RS13580 (JRY14_13540) - 2366372..2367442 (+) 1071 WP_086411420.1 virulence factor -
  JRY14_RS13585 (JRY14_13545) - 2367576..2368805 (-) 1230 WP_086411350.1 IS110 family transposase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12770.63 Da        Isoelectric Point: 9.7036

>NTDB_id=565977 JRY14_RS13565 WP_000982019.1 2362162..2362497(+) (ssbA) [Bacillus thuringiensis strain B13]
MMNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCKKGSLVGITGRIQTS
NYDNEQGKRIYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=565977 JRY14_RS13565 WP_000982019.1 2362162..2362497(+) (ssbA) [Bacillus thuringiensis strain B13]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGCGTCGCTTATGC
ACGAATATGTGTTGCAGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTCGATTTTATTAATTGTGTCGTTT
GGCGCAAATCGGCTGAGAATGTAACTGAATATTGTAAAAAGGGATCACTCGTTGGGATTACAGGGCGTATTCAGACTAGT
AATTACGATAATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.434

95.495

0.568
  ssb Latilactobacillus sakei subsp. sakei 23K

56.604

95.495

0.541
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.786

100

0.523
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

99.099

0.432
  ssbB Lactococcus lactis subsp. cremoris KW2

44.762

94.595

0.423
  ssbA Streptococcus mutans UA159

40

99.099

0.396
  ssbB/cilA Streptococcus mitis NCTC 12261

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae TIGR4

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae D39

39.091

99.099

0.387
  ssbB/cilA Streptococcus pneumoniae R6

39.091

99.099

0.387
  ssbB/cilA Streptococcus mitis SK321

39.091

99.099

0.387
  ssbB/cilA Streptococcus pneumoniae Rx1

39.091

99.099

0.387