Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   LILO_RS10910 Genome accession   NC_020450
Coordinates   2254131..2255069 (-) Length   312 a.a.
NCBI ID   WP_015427168.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis IO-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2249131..2260069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LILO_RS10870 (lilo_2097) - 2250018..2250860 (-) 843 WP_015427160.1 metal ABC transporter substrate-binding protein -
  LILO_RS10875 (lilo_2098) - 2250857..2251294 (-) 438 WP_015427161.1 zinc-dependent MarR family transcriptional regulator -
  LILO_RS10880 (lilo_2099) comGG 2251376..2251660 (-) 285 WP_015427162.1 competence type IV pilus minor pilin ComGG Machinery gene
  LILO_RS10885 (lilo_2100) comGF 2251699..2252145 (-) 447 WP_042230641.1 competence type IV pilus minor pilin ComGF Machinery gene
  LILO_RS10890 (lilo_2101) comGE 2252108..2252404 (-) 297 WP_015427164.1 competence type IV pilus minor pilin ComGE Machinery gene
  LILO_RS10895 (lilo_2102) comGD 2252376..2252807 (-) 432 WP_015427165.1 competence type IV pilus minor pilin ComGD Machinery gene
  LILO_RS10900 (lilo_2103) comGC 2252767..2253150 (-) 384 WP_015427166.1 competence type IV pilus major pilin ComGC Machinery gene
  LILO_RS10905 (lilo_2104) comGB 2253164..2254237 (-) 1074 WP_080619357.1 competence type IV pilus assembly protein ComGB Machinery gene
  LILO_RS10910 (lilo_2105) comGA 2254131..2255069 (-) 939 WP_015427168.1 competence type IV pilus ATPase ComGA Machinery gene
  LILO_RS11780 - 2255339..2256295 (-) 957 WP_052312061.1 hypothetical protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35631.91 Da        Isoelectric Point: 6.4009

>NTDB_id=56495 LILO_RS10910 WP_015427168.1 2254131..2255069(-) (comGA) [Lactococcus lactis subsp. lactis IO-1]
MIPKMAKELIQRAIDRGASDIYLIASKEKYKLYFRQMTARVLIEEIGLEVGLALLTHFKFLAGMNTGERRRVQLGACWYE
IEESNAKRLRLSTVGDFEGNESLVIRLLHDQNKELDFWFDEELENYDCKRGLHLFAGPVGSGKTSLMFDLARRHFTDLQV
ITIEEPVELIDSDFIQLQVNEVIGNSYDELIKLSLRHRPDLLIVGEIRDKLTAQAVLRASLTGYTVFSTVHAASVRGVIQ
RLSELGLSHWEIKNALSSVVYQRLIAGKGVLDIAKNEFESWSSENWNKKIDQLLTNGYLTPTEAKREKIKTD

Nucleotide


Download         Length: 939 bp        

>NTDB_id=56495 LILO_RS10910 WP_015427168.1 2254131..2255069(-) (comGA) [Lactococcus lactis subsp. lactis IO-1]
ATGATACCAAAAATGGCAAAAGAATTAATTCAAAGAGCAATTGATAGAGGTGCATCAGATATTTATCTGATTGCTTCAAA
AGAAAAGTATAAACTTTATTTTCGACAAATGACAGCGCGTGTTCTGATAGAAGAAATTGGGTTAGAAGTTGGCTTAGCAC
TACTTACTCACTTTAAGTTTCTAGCTGGGATGAATACAGGAGAACGCAGACGAGTTCAATTGGGAGCTTGTTGGTATGAA
ATAGAGGAAAGTAATGCAAAACGTTTGCGTCTTTCAACAGTGGGGGATTTCGAGGGTAATGAATCCTTAGTAATACGTCT
CTTGCATGATCAAAACAAAGAACTTGATTTTTGGTTTGATGAAGAGCTAGAGAATTATGATTGTAAAAGAGGATTGCATC
TCTTTGCCGGTCCAGTAGGCTCGGGCAAAACATCTTTAATGTTTGATTTAGCTCGTCGTCATTTTACAGATTTACAAGTT
ATCACTATTGAAGAACCCGTTGAGTTGATTGATTCCGATTTTATTCAGTTACAAGTCAACGAAGTCATTGGTAATAGTTA
TGATGAATTAATTAAATTATCACTGAGGCATCGCCCAGATTTGTTAATCGTTGGTGAAATTCGTGATAAATTGACCGCTC
AAGCAGTTTTACGGGCTAGTTTGACAGGTTATACAGTGTTTTCAACCGTTCATGCCGCTTCTGTTAGAGGTGTCATTCAG
AGATTATCAGAGCTGGGTTTAAGTCATTGGGAAATAAAAAATGCTTTATCAAGTGTTGTTTATCAGCGTTTAATAGCTGG
GAAAGGAGTATTAGACATTGCCAAAAACGAATTTGAGTCTTGGTCATCAGAAAATTGGAATAAAAAAATTGATCAGCTAC
TTACAAATGGATATCTCACACCTACTGAAGCCAAGAGGGAAAAAATTAAGACTGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Lactococcus lactis subsp. cremoris KW2

77.564

100

0.776
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

55.305

99.679

0.551
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

54.019

99.679

0.538
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

53.055

99.679

0.529
  comGA/cglA/cilD Streptococcus pneumoniae D39

53.055

99.679

0.529
  comGA/cglA/cilD Streptococcus pneumoniae R6

53.055

99.679

0.529
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

53.055

99.679

0.529
  comYA Streptococcus mutans UA140

52.564

100

0.526
  comYA Streptococcus mutans UA159

52.564

100

0.526
  comYA Streptococcus gordonii str. Challis substr. CH1

52.077

100

0.522

Multiple sequence alignment