Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BAM5036_RS11205 Genome accession   NC_020410
Coordinates   2385553..2387283 (-) Length   576 a.a.
NCBI ID   WP_015417799.1    Uniprot ID   -
Organism   Bacillus velezensis UCMB5036     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2380553..2392283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAM5036_RS11180 - 2380972..2381184 (+) 213 WP_007408362.1 spore germination protein -
  BAM5036_RS11185 (BAM5036_2175) - 2381310..2381522 (+) 213 WP_003153181.1 spore germination protein -
  BAM5036_RS11190 (BAM5036_2176) alr 2381698..2382879 (+) 1182 WP_012117960.1 alanine racemase -
  BAM5036_RS11195 (BAM5036_2177) spo0A 2383028..2383828 (-) 801 WP_015417798.1 sporulation transcription factor Spo0A Regulator
  BAM5036_RS11200 (BAM5036_2178) spoIVB 2384109..2385389 (-) 1281 WP_007408360.1 SpoIVB peptidase -
  BAM5036_RS11205 (BAM5036_2179) recN 2385553..2387283 (-) 1731 WP_015417799.1 DNA repair protein RecN Machinery gene
  BAM5036_RS11210 (BAM5036_2180) ahrC 2387315..2387764 (-) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  BAM5036_RS11215 (BAM5036_2181) - 2387861..2388706 (-) 846 WP_007612503.1 TlyA family RNA methyltransferase -
  BAM5036_RS11220 (BAM5036_2182) dxs 2388703..2390604 (-) 1902 WP_015417800.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BAM5036_RS11225 (BAM5036_2183) - 2390748..2391638 (-) 891 WP_007408353.1 polyprenyl synthetase family protein -
  BAM5036_RS11230 (BAM5036_2184) - 2391628..2391882 (-) 255 WP_007408352.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64080.90 Da        Isoelectric Point: 4.7342

>NTDB_id=56376 BAM5036_RS11205 WP_015417799.1 2385553..2387283(-) (recN) [Bacillus velezensis UCMB5036]
MLAELSIKNFAIIEELTISFERGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFEVC
REQGIDASDDMIVMRRDINAGGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLELLDRFAGAEAESALQ
AYHEGYERYMKLLKKVKKLSESEQEMAHRLDLIQFQLEEIESAKLELNEDELLQEERKQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLQKLSESVSSSYYLLEDATFQMRNLLDDLEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYGSKIEEEIDQIENRDSHLEALKKELESVGKDVAVEAANLSKIRKAWAKKLAEAIHQELKSLYMGKSTFDTEFLV
KTDPSASEAPVVDGQPVQLTQKGIDLVKFLISTNTGEPLKPLSKVASGGELSRVMLAMKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSTGSQVLCITHLPQVAAMADTHLLIAKEFKDGRTTTHVTPLSKQDKVAEIGRMIAGVEVTDLTKR
HAQELLKQAGQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=56376 BAM5036_RS11205 WP_015417799.1 2385553..2387283(-) (recN) [Bacillus velezensis UCMB5036]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAGGAACTGACGATTTCGTTTGAGCGGGGGCTCACCGTCCT
GACGGGAGAAACAGGGGCCGGCAAGTCAATTATTATAGACGCCGTTTCCCTATTAGTCGGCGGCCGCGGCTCGTCTGAAT
TTGTCCGTTACGGTGAAACAAAGGCCGAGCTTGAAGGACTGTTTCTATTGGACAGCGGTCATCCCGTTTTTGAAGTATGC
CGTGAGCAGGGAATAGACGCATCTGACGACATGATTGTCATGAGAAGGGACATTAATGCCGGAGGAAAAAGCGTCTGCCG
TGTCAACGGAAAATTAGTGACGATTGCGGCTTTGAGGGAAATCGGCAGACTTTTATTAGATATTCACGGACAGCATGATA
ACCAGCTGTTAATGGAGGACGATAAACACTTAGAGCTGTTGGACAGGTTTGCGGGCGCTGAGGCCGAATCCGCGCTTCAG
GCTTACCATGAAGGCTATGAGCGTTATATGAAGCTGCTCAAAAAAGTGAAGAAGCTGTCAGAAAGCGAGCAGGAAATGGC
GCATCGGCTAGACCTGATTCAATTTCAGCTTGAAGAAATCGAGTCGGCGAAGCTTGAATTGAATGAAGACGAGCTTCTTC
AGGAAGAGCGGAAGCAGATATCCAACTTTGAAAAAATTTATGAATCATTGCAAAACGCCTATAATGCGCTCCGCAGCGAA
CAGGGGGGGCTTGACTGGGTCGGAATGGCCTCTGCCCAGCTTGAAGATATTTCGGATATCAATGAACCGCTGCAAAAGCT
GTCAGAAAGTGTGTCAAGTTCCTATTATCTGTTGGAGGATGCAACCTTTCAGATGCGCAATCTGTTAGATGATCTGGAAT
ATGACCCGGAACGGCTGAATTTTATTGAAACCCGTTTAAATGAGATCAAACAGCTGAAGCGCAAATACGGAGCGACGGTA
GAAGACATTTTGGAATACGGCTCCAAAATAGAAGAGGAAATCGATCAAATCGAGAACCGCGACAGCCACCTTGAAGCGCT
GAAGAAGGAACTGGAGTCGGTCGGCAAAGATGTGGCCGTAGAAGCCGCGAATTTATCAAAAATCAGAAAAGCATGGGCTA
AGAAACTGGCGGAAGCGATTCATCAGGAATTAAAAAGTCTGTATATGGGCAAATCAACGTTTGATACGGAATTTCTCGTG
AAAACCGATCCGTCAGCCAGTGAAGCACCGGTTGTTGACGGGCAGCCCGTGCAGCTTACCCAAAAGGGGATTGACCTTGT
GAAGTTTTTAATTTCAACAAACACCGGTGAGCCTTTAAAACCGCTGTCAAAGGTCGCTTCCGGAGGCGAGCTTTCAAGGG
TGATGCTGGCGATGAAAAGTATTTTTTCTTCCCAGCAGGATGTCACCTCCATCATCTTTGACGAAGTGGACACCGGTGTA
AGCGGGCGGGTTGCCCAAGCCATCGCGGAAAAAATCCATAAAGTATCGACCGGTTCACAGGTGCTCTGCATTACACACCT
GCCGCAGGTTGCCGCTATGGCGGATACGCACCTTCTGATCGCAAAAGAATTCAAAGACGGCCGGACGACAACGCATGTCA
CGCCGCTTTCTAAACAGGACAAGGTAGCGGAAATCGGCCGCATGATTGCGGGCGTCGAAGTGACCGATCTGACAAAACGG
CATGCACAAGAGCTTTTAAAACAGGCCGGACAGGTAAAAACGACAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

88.542

100

0.885

Multiple sequence alignment