Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PA8380_RS00105 Genome accession   NZ_AP014839
Coordinates   22873..23961 (+) Length   362 a.a.
NCBI ID   WP_017148358.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 8380     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 17873..28961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA8380_RS00085 (PA8380_00170) rsmB 18767..20071 (-) 1305 WP_016561456.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PA8380_RS00090 (PA8380_00180) fmt 20068..21012 (-) 945 WP_009316076.1 methionyl-tRNA formyltransferase -
  PA8380_RS00095 (PA8380_00190) def 21067..21573 (-) 507 WP_003107059.1 peptide deformylase -
  PA8380_RS00100 (PA8380_00200) tsaP 21712..22737 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PA8380_RS00105 (PA8380_00210) dprA 22873..23961 (+) 1089 WP_017148358.1 DNA-processing protein DprA Machinery gene
  PA8380_RS00110 (PA8380_00220) - 24002..24559 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  PA8380_RS00115 (PA8380_00230) - 24569..25546 (-) 978 WP_003111202.1 NADPH:quinone reductase -
  PA8380_RS00120 (PA8380_00240) hemF 25737..26654 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  PA8380_RS00125 (PA8380_00250) aroE 26712..27536 (+) 825 WP_003111201.1 shikimate dehydrogenase -
  PA8380_RS00130 (PA8380_00260) - 27647..28633 (+) 987 WP_003111200.1 phospholipase C -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 37789.29 Da        Isoelectric Point: 6.8883

>NTDB_id=56376 PA8380_RS00105 WP_017148358.1 22873..23961(+) (dprA) [Pseudomonas aeruginosa strain 8380]
MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPASAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGPR
RHLLMWDDPGYPALLAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA
AHEGALEAGGATVAVLGTGLRRLYPRRHEALARRIVEDGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPVQPLPHPLLALLRAAP
YTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=56376 PA8380_RS00105 WP_017148358.1 22873..23961(+) (dprA) [Pseudomonas aeruginosa strain 8380]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGCCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT
GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCAGCGCCTGGCGCACCCTGGGAGTGCCTG
CCGAGGCCGCCGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC
AGGCACCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT
CGAAGGCGCTCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCA
CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGCATCGATGGCGCC
GCCCACGAGGGCGCGCTGGAGGCTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGCCG
CCACGAGGCGCTGGCGCGGCGCATCGTCGAGGATGGCGGCGCGCTGGTTTCGGAACTGCCGCTGGACAGCCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGTCGCGAGGTGTACGCCATCCCGGGCTCCATCCACCATCCCGG
CGCACGTGGCTGCCACCAGCTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGTGCAGCCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCC
TACACCAGCGAAGGCCTGGCCGCCGCCAGCGGCATGACGCTGCCCGACGTGCTGGCGACGCTCAGCGAACTGGAACTCGA
CGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)

DprA winged helix domain (WHD_DprA)

(297-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

43.784

100

0.448
  dprA Vibrio cholerae strain A1552

43.048

100

0.445
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

43.048

100

0.445
  dprA Legionella pneumophila strain ERS1305867

43.38

98.066

0.425
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.373

97.79

0.414
  dprA Acinetobacter baumannii D1279779

37.673

99.724

0.376
  dprA Neisseria gonorrhoeae strain FA1090

44.554

83.702

0.373
  dprA Neisseria meningitidis MC58

46.048

80.387

0.37
  dprA Neisseria meningitidis strain C311

46.048

80.387

0.37
  dprA Glaesserella parasuis strain SC1401

46.853

79.006

0.37
  dprA Neisseria gonorrhoeae MS11

44.224

83.702

0.37
  dprA Acinetobacter baumannii strain A118

38

96.685

0.367

Multiple sequence alignment