Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   BAM5036_RS11195 Genome accession   NC_020410
Coordinates   2383028..2383828 (-) Length   266 a.a.
NCBI ID   WP_015417798.1    Uniprot ID   -
Organism   Bacillus velezensis UCMB5036     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2378028..2388828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAM5036_RS11165 (BAM5036_2173) - 2378567..2379199 (+) 633 WP_007408365.1 helix-turn-helix domain-containing protein -
  BAM5036_RS20485 - 2379496..2379633 (+) 138 WP_168768911.1 hypothetical protein -
  BAM5036_RS11175 (BAM5036_2174) - 2379727..2380845 (+) 1119 WP_031378952.1 NADH-dependent flavin oxidoreductase -
  BAM5036_RS11180 - 2380972..2381184 (+) 213 WP_007408362.1 spore germination protein -
  BAM5036_RS11185 (BAM5036_2175) - 2381310..2381522 (+) 213 WP_003153181.1 spore germination protein -
  BAM5036_RS11190 (BAM5036_2176) alr 2381698..2382879 (+) 1182 WP_012117960.1 alanine racemase -
  BAM5036_RS11195 (BAM5036_2177) spo0A 2383028..2383828 (-) 801 WP_015417798.1 sporulation transcription factor Spo0A Regulator
  BAM5036_RS11200 (BAM5036_2178) spoIVB 2384109..2385389 (-) 1281 WP_007408360.1 SpoIVB peptidase -
  BAM5036_RS11205 (BAM5036_2179) recN 2385553..2387283 (-) 1731 WP_015417799.1 DNA repair protein RecN Machinery gene
  BAM5036_RS11210 (BAM5036_2180) ahrC 2387315..2387764 (-) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  BAM5036_RS11215 (BAM5036_2181) - 2387861..2388706 (-) 846 WP_007612503.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29657.13 Da        Isoelectric Point: 6.1630

>NTDB_id=56375 BAM5036_RS11195 WP_015417798.1 2383028..2383828(-) (spo0A) [Bacillus velezensis UCMB5036]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRNQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=56375 BAM5036_RS11195 WP_015417798.1 2383028..2383828(-) (spo0A) [Bacillus velezensis UCMB5036]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCAGATGTGCTCG
TTTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGGGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATTCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCGC
CGTCTGCGCAAAGCAGCATTATCCGCAACCAGCCTGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACTGCAAGCCGTGTAGAACGGG
CCATCCGGCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATCGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAGCCAACCAACTCGGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

94.757

100

0.951

Multiple sequence alignment