Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   KEM15_RS09230 Genome accession   NZ_CP073632
Coordinates   1793373..1794323 (-) Length   316 a.a.
NCBI ID   WP_274504329.1    Uniprot ID   -
Organism   Streptococcus parasuis strain NN1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1788373..1799323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEM15_RS09190 (KEM15_09045) - 1788376..1789563 (-) 1188 WP_217374326.1 acetate kinase -
  KEM15_RS09195 (KEM15_09050) comYH 1789613..1790566 (-) 954 WP_217374327.1 class I SAM-dependent methyltransferase Machinery gene
  KEM15_RS09200 (KEM15_09055) comGG 1790586..1791086 (-) 501 WP_274504327.1 competence type IV pilus minor pilin ComGG -
  KEM15_RS09205 (KEM15_09060) comYF 1791064..1791498 (-) 435 WP_217374329.1 competence type IV pilus minor pilin ComGF Machinery gene
  KEM15_RS09210 (KEM15_09065) comGE 1791485..1791778 (-) 294 WP_217374330.1 competence type IV pilus minor pilin ComGE -
  KEM15_RS09215 (KEM15_09070) comGD 1791750..1792154 (-) 405 WP_274504328.1 competence type IV pilus minor pilin ComGD -
  KEM15_RS09220 (KEM15_09075) comYC 1792144..1792422 (-) 279 WP_217374331.1 competence type IV pilus major pilin ComGC Machinery gene
  KEM15_RS09225 (KEM15_09080) comYB 1792424..1793461 (-) 1038 WP_274504957.1 competence type IV pilus assembly protein ComGB Machinery gene
  KEM15_RS09230 (KEM15_09085) comYA 1793373..1794323 (-) 951 WP_274504329.1 competence type IV pilus ATPase ComGA Machinery gene
  KEM15_RS09235 (KEM15_09090) - 1794398..1795360 (+) 963 WP_274504330.1 S66 peptidase family protein -
  KEM15_RS09240 (KEM15_09095) - 1795421..1795762 (-) 342 WP_217374334.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35511.48 Da        Isoelectric Point: 5.4818

>NTDB_id=559539 KEM15_RS09230 WP_274504329.1 1793373..1794323(-) (comYA) [Streptococcus parasuis strain NN1]
MIQEKARKMIEEAVVERVSDIYLIPRGENYQVYHRVMDEREYIQELTEDEVMAIISHFKFLAGLNVGEKRRSQQGSCEYD
YGSGEISLRLSTVGDYRGKESLVIRLLYDQDQQLKFWFGALDRIAQEIKGRGLYLFSGPVGSGKTTLMYQLARLKFPDKQ
ILTIEDPVEIKQEDMLQLQLNEAIGATYDNLIKLSLRHRPDLLIIGEIRDAETARAVIRASLTGATVFSTVHARSVAGVY
ARILELGVSPEELNNALQGIAYQRLIGGGGVVDFAKGNYQNHSSDKWNEQIECLLAAGHISPRQAETEKIVLGSTA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=559539 KEM15_RS09230 WP_274504329.1 1793373..1794323(-) (comYA) [Streptococcus parasuis strain NN1]
ATGATTCAAGAAAAAGCAAGAAAAATGATTGAAGAGGCAGTTGTCGAAAGGGTCAGTGATATTTATTTGATTCCAAGAGG
AGAAAACTACCAAGTCTATCATCGAGTAATGGATGAACGGGAATATATTCAAGAATTAACCGAGGATGAGGTGATGGCCA
TTATTAGCCATTTCAAGTTTTTAGCGGGTTTGAATGTCGGTGAAAAACGGCGTAGCCAGCAAGGCTCTTGTGAATACGAT
TATGGTTCAGGGGAGATTTCCCTTCGGTTATCAACGGTTGGTGATTATCGTGGTAAAGAAAGTTTGGTCATTCGCCTGCT
CTATGATCAAGATCAACAACTTAAATTTTGGTTTGGAGCATTGGATAGAATTGCTCAAGAAATCAAGGGACGAGGGCTCT
ATCTTTTTTCGGGGCCGGTCGGTTCTGGCAAGACCACACTCATGTACCAGCTGGCGAGATTGAAATTTCCAGATAAGCAA
ATTCTAACTATAGAAGATCCAGTGGAAATCAAGCAGGAAGATATGCTCCAACTCCAGCTCAATGAGGCAATTGGTGCTAC
CTATGATAATCTCATCAAACTATCACTTCGTCATCGACCAGATTTACTGATTATTGGAGAAATTAGAGATGCAGAAACTG
CTCGAGCAGTAATTCGAGCTAGTTTGACAGGGGCAACGGTCTTCTCAACGGTTCATGCTAGAAGTGTTGCTGGTGTCTAT
GCTCGCATATTAGAACTGGGTGTAAGTCCTGAAGAATTGAATAATGCTCTTCAAGGAATTGCCTATCAACGATTAATAGG
GGGAGGAGGTGTTGTTGATTTTGCAAAAGGAAACTACCAAAACCATTCCTCGGACAAGTGGAATGAGCAAATTGAATGCC
TTCTTGCAGCGGGACATATCAGTCCTCGGCAGGCAGAAACAGAAAAAATTGTCCTTGGTTCGACAGCGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus gordonii str. Challis substr. CH1

67.742

98.101

0.665
  comYA Streptococcus mutans UA159

67.524

98.418

0.665
  comYA Streptococcus mutans UA140

67.524

98.418

0.665
  comGA/cglA/cilD Streptococcus pneumoniae D39

64.839

98.101

0.636
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

64.839

98.101

0.636
  comGA/cglA/cilD Streptococcus pneumoniae R6

64.839

98.101

0.636
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

64.839

98.101

0.636
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

64.516

98.101

0.633
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

64.516

98.101

0.633
  comGA Lactococcus lactis subsp. cremoris KW2

55.521

100

0.557
  comGA Latilactobacillus sakei subsp. sakei 23K

42.238

87.658

0.37