Detailed information NTG0559538

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: KEM15_RS09225
• Genome accession: NZ_CP073632
• Coordinates: 1792424..1793461 (-)
• Length: 345 a.a.
• NCBI ID: WP_274504957.1
• Uniprot ID: -
• Organism: Streptococcus parasuis strain NN1
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1787424..1798461

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KEM15_RS09185 (KEM15_09040)	-	1787570..1788121 (-)	552	WP_217374325.1	folate family ECF transporter S component	-
KEM15_RS09190 (KEM15_09045)	-	1788376..1789563 (-)	1188	WP_217374326.1	acetate kinase	-
KEM15_RS09195 (KEM15_09050)	comYH	1789613..1790566 (-)	954	WP_217374327.1	class I SAM-dependent methyltransferase	Machinery gene
KEM15_RS09200 (KEM15_09055)	comGG	1790586..1791086 (-)	501	WP_274504327.1	competence type IV pilus minor pilin ComGG	-
KEM15_RS09205 (KEM15_09060)	comYF	1791064..1791498 (-)	435	WP_217374329.1	competence type IV pilus minor pilin ComGF	Machinery gene
KEM15_RS09210 (KEM15_09065)	comGE	1791485..1791778 (-)	294	WP_217374330.1	competence type IV pilus minor pilin ComGE	-
KEM15_RS09215 (KEM15_09070)	comGD	1791750..1792154 (-)	405	WP_274504328.1	competence type IV pilus minor pilin ComGD	-
KEM15_RS09220 (KEM15_09075)	comYC	1792144..1792422 (-)	279	WP_217374331.1	competence type IV pilus major pilin ComGC	Machinery gene
KEM15_RS09225 (KEM15_09080)	comYB	1792424..1793461 (-)	1038	WP_274504957.1	competence type IV pilus assembly protein ComGB	Machinery gene
KEM15_RS09230 (KEM15_09085)	comYA	1793373..1794323 (-)	951	WP_274504329.1	competence type IV pilus ATPase ComGA	Machinery gene
KEM15_RS09235 (KEM15_09090)	-	1794398..1795360 (+)	963	WP_274504330.1	S66 peptidase family protein	-
KEM15_RS09240 (KEM15_09095)	-	1795421..1795762 (-)	342	WP_217374334.1	DUF1033 family protein	-

Sequence

Protein

• Length: 345 a.a.
• Molecular weight: 39259.18 Da
• Isoelectric Point: 9.2929

>NTDB_id=559538 KEM15_RS09225 WP_274504957.1 1792424..1793461(-) (comYB) [Streptococcus parasuis strain NN1]
MSKLNAFLQRDISVLGRQKQKKLSLVRQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADQYTQVLSDGLLAGKPFSSLL
GDLRFSDAVVTQVALAEVHGNTSLSLSHIQSYLENVSKVRKKLIEVATYPIILLAFLLLIMLGLKNYLLSQLEEGNVATI
LIQHLPTIFLSFCGLFFLAVLGGLIWYHRTNKIKAFSRLVALPFFGKLIQTYLTAYYAREWGSLIGQGLDMPQIVGLMQE
QKSQLFREIGEDLERSLSDGHSFHSHIQTYGFFKRELSLMIEYGQVKSKLGSELSVYATECWEEFFTRVNRAMQLIQPLV
FLFVALMVVLIYAAMLLPIYQNMEL

Nucleotide

• Length: 1038 bp

>NTDB_id=559538 KEM15_RS09225 WP_274504957.1 1792424..1793461(-) (comYB) [Streptococcus parasuis strain NN1]
ATGAGCAAATTGAATGCCTTCTTGCAGCGGGACATATCAGTCCTCGGCAGGCAGAAACAGAAAAAATTGTCCTTGGTTCG
ACAGCGTAAGGTGATTGAGCTCTTTAACAATCTTTTTGCTAGTGGATTTCACTTGGGAGAAATTGTCGATTTTCTCAAAC
GGAGTCAACTCTTGGCGGACCAATACACGCAAGTTTTGTCCGACGGTCTTCTTGCAGGAAAGCCATTTTCAAGTCTTTTG
GGAGATTTACGCTTTTCGGATGCGGTTGTCACTCAGGTGGCCTTGGCGGAGGTTCATGGCAATACCAGTCTGAGTCTAAG
TCATATTCAATCTTATCTTGAAAATGTTAGTAAGGTCCGTAAAAAATTGATAGAAGTAGCAACCTATCCAATCATCTTGC
TTGCCTTTTTATTATTGATAATGTTGGGACTAAAAAACTATTTGTTGTCCCAGTTGGAAGAAGGAAATGTTGCGACTATA
TTGATTCAACACTTGCCAACAATCTTTTTATCCTTTTGTGGCCTTTTCTTTCTTGCTGTCTTAGGTGGGCTTATTTGGTA
TCACAGAACAAATAAAATCAAGGCTTTTTCTCGCTTAGTAGCTCTGCCATTTTTCGGAAAACTCATCCAAACCTATTTGA
CCGCCTATTACGCGAGGGAGTGGGGAAGCTTGATTGGTCAGGGACTTGATATGCCTCAGATTGTGGGCTTGATGCAGGAA
CAAAAATCACAGCTTTTTCGTGAGATTGGTGAGGATTTAGAGCGTTCACTTTCTGATGGGCATAGTTTCCATTCTCATAT
ACAAACGTATGGCTTTTTCAAACGGGAGCTGAGTCTAATGATTGAGTATGGGCAAGTCAAATCAAAATTAGGAAGTGAGC
TATCTGTGTATGCAACAGAGTGTTGGGAGGAATTTTTTACTCGTGTTAATAGGGCCATGCAGTTGATTCAACCATTGGTT
TTTCTCTTTGTGGCCTTAATGGTCGTTCTCATCTATGCAGCCATGTTGCTGCCTATTTATCAGAATATGGAGTTATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (33-144)

• Type II secretion system (T2SS), protein F (T2SSF) (218-338)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus gordonii str. Challis substr. CH1	60.294	98.551	0.594
comYB	Streptococcus mutans UA140	59.531	98.841	0.588
comYB	Streptococcus mutans UA159	59.531	98.841	0.588
comGB/cglB	Streptococcus mitis SK321	59.701	97.101	0.58
comGB/cglB	Streptococcus mitis NCTC 12261	59.403	97.101	0.577
comGB/cglB	Streptococcus pneumoniae Rx1	58.806	97.101	0.571
comGB/cglB	Streptococcus pneumoniae D39	58.806	97.101	0.571
comGB/cglB	Streptococcus pneumoniae R6	58.806	97.101	0.571
comGB/cglB	Streptococcus pneumoniae TIGR4	58.806	97.101	0.571
comGB	Lactococcus lactis subsp. cremoris KW2	51.039	97.681	0.499