Detailed information NTG0559536

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: KEM15_RS09205
• Genome accession: NZ_CP073632
• Coordinates: 1791064..1791498 (-)
• Length: 144 a.a.
• NCBI ID: WP_217374329.1
• Uniprot ID: -
• Organism: Streptococcus parasuis strain NN1
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1786064..1796498

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KEM15_RS09180 (KEM15_09035)	-	1786259..1787515 (-)	1257	WP_217375198.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
KEM15_RS09185 (KEM15_09040)	-	1787570..1788121 (-)	552	WP_217374325.1	folate family ECF transporter S component	-
KEM15_RS09190 (KEM15_09045)	-	1788376..1789563 (-)	1188	WP_217374326.1	acetate kinase	-
KEM15_RS09195 (KEM15_09050)	comYH	1789613..1790566 (-)	954	WP_217374327.1	class I SAM-dependent methyltransferase	Machinery gene
KEM15_RS09200 (KEM15_09055)	comGG	1790586..1791086 (-)	501	WP_274504327.1	competence type IV pilus minor pilin ComGG	-
KEM15_RS09205 (KEM15_09060)	comYF	1791064..1791498 (-)	435	WP_217374329.1	competence type IV pilus minor pilin ComGF	Machinery gene
KEM15_RS09210 (KEM15_09065)	comGE	1791485..1791778 (-)	294	WP_217374330.1	competence type IV pilus minor pilin ComGE	-
KEM15_RS09215 (KEM15_09070)	comGD	1791750..1792154 (-)	405	WP_274504328.1	competence type IV pilus minor pilin ComGD	-
KEM15_RS09220 (KEM15_09075)	comYC	1792144..1792422 (-)	279	WP_217374331.1	competence type IV pilus major pilin ComGC	Machinery gene
KEM15_RS09225 (KEM15_09080)	comYB	1792424..1793461 (-)	1038	WP_274504957.1	competence type IV pilus assembly protein ComGB	Machinery gene
KEM15_RS09230 (KEM15_09085)	comYA	1793373..1794323 (-)	951	WP_274504329.1	competence type IV pilus ATPase ComGA	Machinery gene
KEM15_RS09235 (KEM15_09090)	-	1794398..1795360 (+)	963	WP_274504330.1	S66 peptidase family protein	-
KEM15_RS09240 (KEM15_09095)	-	1795421..1795762 (-)	342	WP_217374334.1	DUF1033 family protein	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 16381.75 Da
• Isoelectric Point: 6.4707

>NTDB_id=559536 KEM15_RS09205 WP_217374329.1 1791064..1791498(-) (comYF) [Streptococcus parasuis strain NN1]
MRKTKLAAFTLLECLITLLIISGSLLVIEGLSKLIAHEVGYQERHVEKQWLLFCDQLRAEWEGASLDRVDSGKLYLTKGE
KSLAFGKSVADDFRKTNANGQGYQPMLYKVYSATYAQQGEVIQLDVTFESGEERSFRYVFEKTN

Nucleotide

• Length: 435 bp

>NTDB_id=559536 KEM15_RS09205 WP_217374329.1 1791064..1791498(-) (comYF) [Streptococcus parasuis strain NN1]
TTGAGAAAAACTAAGTTAGCCGCGTTCACCCTCTTGGAATGTTTAATTACCTTACTCATTATTTCTGGCAGCTTGCTAGT
AATTGAAGGATTATCAAAATTGATAGCGCATGAGGTTGGCTATCAAGAACGTCATGTGGAAAAACAGTGGTTACTATTTT
GTGATCAATTGCGGGCTGAATGGGAAGGAGCAAGTCTTGATCGGGTTGATTCTGGAAAGTTGTACCTAACCAAAGGGGAA
AAATCATTGGCATTTGGTAAGTCTGTGGCAGATGATTTTCGCAAGACAAATGCAAATGGTCAGGGCTATCAGCCCATGTT
GTACAAAGTTTATTCAGCTACTTATGCCCAACAAGGCGAGGTTATACAGCTGGATGTAACATTTGAAAGTGGGGAGGAAA
GGAGTTTTAGGTATGTTTTTGAAAAAACGAATTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (42-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA159	53.472	100	0.535
comYF	Streptococcus mutans UA140	53.472	100	0.535
comGF	Lactococcus lactis subsp. cremoris KW2	47.518	97.917	0.465
comGF/cglF	Streptococcus mitis NCTC 12261	45.714	97.222	0.444
comGF/cglF	Streptococcus pneumoniae Rx1	44.203	95.833	0.424
comGF/cglF	Streptococcus pneumoniae D39	44.203	95.833	0.424
comGF/cglF	Streptococcus pneumoniae R6	44.203	95.833	0.424
comGF/cglF	Streptococcus pneumoniae TIGR4	44.203	95.833	0.424
comGF/cglF	Streptococcus mitis SK321	42.857	97.222	0.417