Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   KEM15_RS09195 Genome accession   NZ_CP073632
Coordinates   1789613..1790566 (-) Length   317 a.a.
NCBI ID   WP_217374327.1    Uniprot ID   -
Organism   Streptococcus parasuis strain NN1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1784613..1795566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEM15_RS09170 (KEM15_09025) - 1784656..1784940 (-) 285 WP_171989715.1 DUF4651 domain-containing protein -
  KEM15_RS09175 (KEM15_09030) pepA 1785153..1786214 (+) 1062 WP_217374324.1 glutamyl aminopeptidase -
  KEM15_RS09180 (KEM15_09035) - 1786259..1787515 (-) 1257 WP_217375198.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  KEM15_RS09185 (KEM15_09040) - 1787570..1788121 (-) 552 WP_217374325.1 folate family ECF transporter S component -
  KEM15_RS09190 (KEM15_09045) - 1788376..1789563 (-) 1188 WP_217374326.1 acetate kinase -
  KEM15_RS09195 (KEM15_09050) comYH 1789613..1790566 (-) 954 WP_217374327.1 class I SAM-dependent methyltransferase Machinery gene
  KEM15_RS09200 (KEM15_09055) comGG 1790586..1791086 (-) 501 WP_274504327.1 competence type IV pilus minor pilin ComGG -
  KEM15_RS09205 (KEM15_09060) comYF 1791064..1791498 (-) 435 WP_217374329.1 competence type IV pilus minor pilin ComGF Machinery gene
  KEM15_RS09210 (KEM15_09065) comGE 1791485..1791778 (-) 294 WP_217374330.1 competence type IV pilus minor pilin ComGE -
  KEM15_RS09215 (KEM15_09070) comGD 1791750..1792154 (-) 405 WP_274504328.1 competence type IV pilus minor pilin ComGD -
  KEM15_RS09220 (KEM15_09075) comYC 1792144..1792422 (-) 279 WP_217374331.1 competence type IV pilus major pilin ComGC Machinery gene
  KEM15_RS09225 (KEM15_09080) comYB 1792424..1793461 (-) 1038 WP_274504957.1 competence type IV pilus assembly protein ComGB Machinery gene
  KEM15_RS09230 (KEM15_09085) comYA 1793373..1794323 (-) 951 WP_274504329.1 competence type IV pilus ATPase ComGA Machinery gene
  KEM15_RS09235 (KEM15_09090) - 1794398..1795360 (+) 963 WP_274504330.1 S66 peptidase family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35624.87 Da        Isoelectric Point: 4.6418

>NTDB_id=559535 KEM15_RS09195 WP_217374327.1 1789613..1790566(-) (comYH) [Streptococcus parasuis strain NN1]
MKYEKIEQAYNLLLENVQTIQNQLGTNIYDAMIEQNAAYVAGQHETELVLNNNQILRELALTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVSTPRVTVLEIGSGTGNLAQTILNASQKELDYLGIEIDDLLIDLSASIADVMGAA
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPNEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEKANIVAMIALPPNLFGKAAMAKSIFVLQKKAARPLTPFVYPLQSLQEPEAIQKFMVNFKNWKQENAI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=559535 KEM15_RS09195 WP_217374327.1 1789613..1790566(-) (comYH) [Streptococcus parasuis strain NN1]
ATGAAATATGAAAAAATTGAACAGGCCTACAACCTGCTTTTAGAAAATGTACAGACGATTCAAAATCAACTTGGGACCAA
TATTTATGATGCTATGATTGAGCAAAATGCTGCCTATGTAGCTGGTCAACATGAAACCGAACTTGTTCTCAACAACAATC
AAATCTTGAGAGAATTAGCCTTGACAAAGGAAGAATGGCGTCGTGCTTACCAATTCTTACTCATTAAAGCTAACCAGACA
GAACCGATGCAGTACAACCATCAGTTCACACCTGACTCTATCGGATTTATTTTATCTTTCCTTGTTGACCAGTTGGTCTC
TACTCCAAGAGTAACGGTTTTGGAAATTGGTTCTGGTACAGGAAACTTAGCTCAGACCATTCTCAACGCCAGCCAGAAGG
AATTAGATTATTTAGGGATTGAAATAGATGACCTCTTGATTGATTTATCGGCTAGTATCGCGGATGTCATGGGAGCAGCT
ATTTCATTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAAGAAAGCCAAGTGATTTTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCTAGCCGTTATCAGGTAGCCAGTCCAAATGAACATACCTACGCCCATCATTTGCTCA
TGGAACAGTCCCTCAAATATCTGGAAAAAGATGGATTTGCGATTTTACTGGCTCCAAATGATTTATTAACTAGTCCGCAA
AGCGATTTATTAAAAGGCTGGTTACAAGAAAAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTTTTTGGGAA
GGCTGCCATGGCCAAGTCCATTTTTGTGTTACAAAAGAAAGCTGCCAGACCTTTAACTCCTTTCGTTTATCCTTTGCAAA
GCCTGCAAGAACCAGAAGCGATTCAGAAGTTCATGGTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTGA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(68-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

59.494

99.685

0.593
  comYH Streptococcus mutans UA159

59.177

99.685

0.59