NTDB

Overview

Name	pilA	Type	Machinery gene
Locus tag	L2Z42_RS14520	Genome accession	NZ_CP091335
Coordinates	3009117..3009581 (+)	Length	154 a.a.
NCBI ID	WP_000993723.1	Uniprot ID	-
Organism	Acinetobacter baumannii strain ATCC17978-VUB
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3004117..3014581

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L2Z42_RS14500 (L2Z42_14500)	-	3005509..3006396 (+)	888	WP_001017325.1	metal-dependent hydrolase	-
L2Z42_RS14505 (L2Z42_14505)	-	3006527..3007117 (+)	591	WP_000846931.1	LemA family protein	-
L2Z42_RS14510 (L2Z42_14510)	-	3007139..3008221 (+)	1083	WP_001246375.1	TPM domain-containing protein	-
L2Z42_RS14515 (L2Z42_14515)	-	3008215..3008775 (+)	561	WP_000258957.1	TPM domain-containing protein	-
L2Z42_RS14520 (L2Z42_14520)	pilA	3009117..3009581 (+)	465	WP_000993723.1	pilin	Machinery gene
L2Z42_RS14525 (L2Z42_14525)	-	3009731..3011359 (+)	1629	WP_025467430.1	O-antigen ligase family protein	-
L2Z42_RS14530 (L2Z42_14530)	bfr	3011403..3011867 (-)	465	WP_000678124.1	bacterioferritin	-
L2Z42_RS14535 (L2Z42_14535)	-	3012112..3012306 (-)	195	WP_000289091.1	bacterioferritin-associated ferredoxin	-
L2Z42_RS14540 (L2Z42_14540)	-	3012516..3012899 (-)	384	WP_000090000.1	RidA family protein	-

Sequence

Protein

Download Length: 154 a.a. Molecular weight: 15445.69 Da Isoelectric Point: 8.1130

                                >NTDB_id=558655 L2Z42_RS14520 WP_000993723.1 3009117..3009581(+) (pilA) [Acinetobacter baumannii strain ATCC17978-VUB]

MNAQKGFTLIELMIVVAIIGILAAIAIPQYQKYTARSQITAALAEISPGKTQFELALSEGTANSVNNNPAAIGLKSTTNN

CSAVNVTANGTTGTIACTLQGSATITGGVLTLTRSADVAAASGVNANVGGWTCSITKGTTDISSVIAPKGCTII

Nucleotide

Download Length: 465 bp

                                >NTDB_id=558655 L2Z42_RS14520 WP_000993723.1 3009117..3009581(+) (pilA) [Acinetobacter baumannii strain ATCC17978-VUB]

ATGAATGCACAAAAAGGTTTTACATTAATTGAACTCATGATCGTGGTTGCCATTATCGGTATTTTGGCAGCAATTGCGAT

TCCGCAATATCAGAAATACACTGCTCGTTCTCAAATTACAGCAGCATTGGCGGAAATCAGCCCAGGGAAAACTCAATTTG

AACTAGCTCTATCCGAAGGTACAGCTAACAGTGTGAATAATAACCCCGCAGCAATTGGTTTAAAAAGTACTACTAATAAT

TGTTCTGCTGTTAATGTAACTGCAAATGGAACTACTGGTACTATTGCATGTACGTTACAAGGCTCTGCTACAATTACTGG

TGGTGTTCTAACTTTAACACGTAGTGCAGATGTAGCAGCTGCTTCTGGAGTAAATGCAAATGTGGGTGGCTGGACATGTT

CTATTACTAAAGGAACAACAGATATTTCTTCAGTAATTGCTCCAAAAGGCTGTACAATAATTTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(35-152)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilA	Acinetobacter baumannii strain A118	46.154	100	0.468
pilA	Pseudomonas aeruginosa PAK	42.073	100	0.448
pilA	Vibrio cholerae strain A1552	44.156	100	0.442
pilA	Vibrio cholerae C6706	44.156	100	0.442
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	44.156	100	0.442
pilA/pilAII	Pseudomonas stutzeri DSM 10701	45.333	97.403	0.442
pilA/pilAI	Pseudomonas stutzeri DSM 10701	48.529	88.312	0.429
pilA	Vibrio parahaemolyticus RIMD 2210633	39.333	97.403	0.383
pilA	Ralstonia pseudosolanacearum GMI1000	39.333	97.403	0.383
pilA2	Legionella pneumophila str. Paris	42.963	87.662	0.377
pilA2	Legionella pneumophila strain ERS1305867	42.963	87.662	0.377

Detailed information NTG0558655