Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | GHH_RS16145 | Genome accession | NC_020210 |
| Coordinates | 3262508..3262867 (-) | Length | 119 a.a. |
| NCBI ID | WP_011232661.1 | Uniprot ID | U2WRT9 |
| Organism | Geobacillus sp. GHH01 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3257508..3267867
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GHH_RS16125 (GHH_c32670) | - | 3258690..3259469 (-) | 780 | WP_015375897.1 | hypothetical protein | - |
| GHH_RS16130 (GHH_c32680) | - | 3259754..3261106 (-) | 1353 | WP_015375898.1 | peptidoglycan-binding protein | - |
| GHH_RS16135 (GHH_c32690) | - | 3261261..3261771 (-) | 511 | Protein_3176 | hypothetical protein | - |
| GHH_RS16140 (GHH_c32700) | - | 3261980..3262387 (+) | 408 | WP_015375900.1 | helix-turn-helix domain-containing protein | - |
| GHH_RS16145 (GHH_c32710) | ssbB | 3262508..3262867 (-) | 360 | WP_011232661.1 | single-stranded DNA-binding protein | Machinery gene |
| GHH_RS16150 (GHH_c32720) | - | 3263137..3263577 (+) | 441 | WP_015375901.1 | YwpF-like family protein | - |
| GHH_RS16155 (GHH_c32730) | - | 3263635..3264264 (-) | 630 | WP_015375902.1 | class D sortase | - |
| GHH_RS16160 (GHH_c32740) | - | 3264271..3265170 (-) | 900 | WP_015375903.1 | processed acidic surface protein | - |
| GHH_RS16165 (GHH_c32750) | - | 3265551..3266927 (-) | 1377 | WP_015375904.1 | aspartate kinase | - |
| GHH_RS16170 (GHH_c32760) | - | 3267388..3267822 (-) | 435 | WP_015375905.1 | DUF1284 domain-containing protein | - |
Sequence
Protein
Download Length: 119 a.a. Molecular weight: 13427.38 Da Isoelectric Point: 9.8293
>NTDB_id=55852 GHH_RS16145 WP_011232661.1 3262508..3262867(-) (ssbB) [Geobacillus sp. GHH01]
MRQHMINQVVLVGRLTKDPELRYTAEGAAVATVTLAVARNFRNAEGGIDADFVPCVLWRKTAEHTANYCRKGSMVAVTGR
IQTRRYDKKDGQRVYVTEVVAESVQFLHSGKKPEWPEHV
MRQHMINQVVLVGRLTKDPELRYTAEGAAVATVTLAVARNFRNAEGGIDADFVPCVLWRKTAEHTANYCRKGSMVAVTGR
IQTRRYDKKDGQRVYVTEVVAESVQFLHSGKKPEWPEHV
Nucleotide
Download Length: 360 bp
>NTDB_id=55852 GHH_RS16145 WP_011232661.1 3262508..3262867(-) (ssbB) [Geobacillus sp. GHH01]
ATGCGCCAACACATGATCAACCAAGTCGTGTTGGTCGGCCGATTGACGAAAGATCCCGAGCTTCGCTACACGGCCGAAGG
GGCTGCCGTCGCGACTGTCACACTGGCGGTGGCGAGAAATTTCCGCAACGCGGAAGGGGGGATTGACGCCGATTTCGTTC
CATGCGTTTTATGGCGGAAAACGGCGGAACATACCGCCAATTATTGCCGAAAAGGGTCGATGGTGGCGGTGACGGGGAGA
ATCCAAACGCGCCGCTACGATAAAAAAGACGGTCAACGCGTCTATGTCACCGAAGTCGTCGCGGAGTCCGTCCAATTTCT
CCACTCCGGAAAGAAACCAGAATGGCCGGAGCACGTATAG
ATGCGCCAACACATGATCAACCAAGTCGTGTTGGTCGGCCGATTGACGAAAGATCCCGAGCTTCGCTACACGGCCGAAGG
GGCTGCCGTCGCGACTGTCACACTGGCGGTGGCGAGAAATTTCCGCAACGCGGAAGGGGGGATTGACGCCGATTTCGTTC
CATGCGTTTTATGGCGGAAAACGGCGGAACATACCGCCAATTATTGCCGAAAAGGGTCGATGGTGGCGGTGACGGGGAGA
ATCCAAACGCGCCGCTACGATAAAAAAGACGGTCAACGCGTCTATGTCACCGAAGTCGTCGCGGAGTCCGTCCAATTTCT
CCACTCCGGAAAGAAACCAGAATGGCCGGAGCACGTATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
67.961 |
86.555 |
0.588 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.385 |
87.395 |
0.571 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60 |
88.235 |
0.529 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
48.571 |
88.235 |
0.429 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
46.667 |
88.235 |
0.412 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
46.667 |
88.235 |
0.412 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
45.714 |
88.235 |
0.403 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
45.714 |
88.235 |
0.403 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
45.714 |
88.235 |
0.403 |
| ssbB/cilA | Streptococcus mitis SK321 |
45.714 |
88.235 |
0.403 |
| ssbA | Streptococcus mutans UA159 |
45.714 |
88.235 |
0.403 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
42.308 |
87.395 |
0.37 |