Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KCX70_RS04795 Genome accession   NZ_CP073105
Coordinates   1000694..1001917 (+) Length   407 a.a.
NCBI ID   WP_212619458.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain F2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 995694..1006917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCX70_RS04770 (KCX70_04770) - 996124..996957 (-) 834 WP_212619454.1 hypothetical protein -
  KCX70_RS04775 (KCX70_04775) - 996954..997754 (-) 801 WP_212619455.1 hypothetical protein -
  KCX70_RS04780 (KCX70_04780) - 997814..998239 (-) 426 WP_212619456.1 hypothetical protein -
  KCX70_RS23435 (KCX70_04785) pilA 998259..998444 (-) 186 WP_156716308.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  KCX70_RS04790 (KCX70_04790) pilB 998985..1000691 (+) 1707 WP_212619457.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KCX70_RS04795 (KCX70_04795) pilC 1000694..1001917 (+) 1224 WP_212619458.1 type II secretion system F family protein Machinery gene
  KCX70_RS04800 (KCX70_04800) pilD 1001914..1002780 (+) 867 WP_102846952.1 A24 family peptidase Machinery gene
  KCX70_RS04805 (KCX70_04805) coaE 1003014..1003622 (+) 609 WP_212619459.1 dephospho-CoA kinase -
  KCX70_RS04810 (KCX70_04810) yacG 1003619..1003816 (+) 198 WP_102846950.1 DNA gyrase inhibitor YacG -
  KCX70_RS04815 (KCX70_04815) - 1003848..1004540 (-) 693 WP_102846949.1 energy-coupling factor ABC transporter permease -
  KCX70_RS04820 (KCX70_04820) - 1004640..1005677 (-) 1038 WP_212619460.1 NADP(H)-dependent aldo-keto reductase -
  KCX70_RS04825 (KCX70_04825) rplM 1006049..1006477 (+) 429 WP_019342644.1 50S ribosomal protein L13 -
  KCX70_RS04830 (KCX70_04830) rpsI 1006492..1006884 (+) 393 WP_021209313.1 30S ribosomal protein S9 -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44076.81 Da        Isoelectric Point: 9.9045

>NTDB_id=557943 KCX70_RS04795 WP_212619458.1 1000694..1001917(+) (pilC) [Stutzerimonas stutzeri strain F2]
MAEKALKTSVFTWEGTDRKGSKVKGELSGQSPALIKAQLRKQGINPLKVRKKAVSLFGAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDEVKQEVAAGNSFAASLRKKPQHFDALYCNLVESGEQSGSLETLLDRIATYKEKT
EQLKAKIKKAMTYPIAVIIVAVIVSAILLIKVVPQFESVFHGFGAELPAFTQMVVGLSRWLQESWYLVVVGLFAAAFIFK
HSYKRSEALRDALDRGLLKLPIVGDILYKAVVARYARTLATTFAAGVPLVDALDSVAGATGNVVFRNAVAKIRNDVSSGV
QLNFSMRTAGVFPSMAVQMTAIGEESGSLDEMLDKVAGFYEGEVDNMVDNLTTLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGGVVGG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=557943 KCX70_RS04795 WP_212619458.1 1000694..1001917(+) (pilC) [Stutzerimonas stutzeri strain F2]
ATGGCGGAAAAAGCGTTGAAAACAAGTGTGTTCACCTGGGAAGGAACTGACCGCAAAGGCAGCAAGGTCAAGGGTGAGCT
TTCCGGGCAAAGCCCGGCGCTGATCAAGGCGCAACTGCGCAAGCAAGGTATCAATCCGCTCAAGGTGCGCAAGAAAGCCG
TTTCGCTATTTGGAGCTGGCAAGAAGATCAAGCCGATGGACATCGCCCTGTTCACTCGGCAGATGGCGACCATGATGAAG
GCTGGCGTGCCACTGCTTCAATCGTTCGACATCATTGGCGAGGGCTTCGACAATCCCAACATGCGCAAGCTGGTGGATGA
GGTCAAGCAGGAGGTAGCGGCGGGTAACAGTTTTGCGGCTTCTTTGCGTAAAAAGCCGCAGCACTTCGATGCGCTCTATT
GCAACCTGGTCGAGTCCGGTGAGCAGTCTGGCTCTCTTGAGACTTTGTTGGATAGGATTGCAACCTATAAAGAGAAGACC
GAGCAGCTTAAAGCGAAAATCAAAAAGGCTATGACCTATCCAATCGCGGTGATCATAGTGGCAGTAATCGTCTCAGCAAT
ACTCCTAATTAAAGTGGTGCCGCAATTCGAAAGTGTTTTTCATGGGTTTGGCGCTGAGTTGCCCGCATTCACTCAGATGG
TGGTGGGGCTGTCTCGTTGGTTGCAAGAGTCGTGGTATCTGGTTGTGGTCGGCCTGTTTGCCGCCGCGTTTATATTCAAG
CATAGCTATAAGCGGTCGGAGGCATTGCGTGACGCGCTTGATCGCGGGCTTCTCAAATTGCCTATCGTGGGTGACATCCT
ATATAAAGCTGTCGTCGCCCGTTACGCGCGTACTTTGGCCACGACTTTTGCAGCAGGCGTGCCGCTCGTGGACGCCCTTG
ATTCGGTCGCCGGCGCGACCGGTAACGTTGTTTTTCGCAATGCGGTCGCCAAGATCCGCAATGACGTGTCCTCCGGTGTT
CAGCTTAACTTTTCTATGCGTACCGCTGGCGTATTCCCATCCATGGCGGTGCAGATGACAGCCATCGGTGAAGAGTCAGG
CTCGCTGGATGAAATGCTCGATAAAGTCGCGGGCTTCTACGAAGGTGAGGTCGACAACATGGTCGACAACCTAACTACGC
TAATGGAGCCAATGATAATGGCGGTCTTGGGGGTGCTTGTTGGCGGCCTAATCATTGCGATGTATTTGCCTATTTTCCAA
CTCGGCGGTGTGGTTGGAGGATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

81.235

99.509

0.808
  pilC Acinetobacter baylyi ADP1

61.576

99.754

0.614
  pilC Acinetobacter baumannii D1279779

60.494

99.509

0.602
  pilC Legionella pneumophila strain ERS1305867

51.768

97.297

0.504
  pilG Neisseria gonorrhoeae MS11

44.527

98.771

0.44
  pilG Neisseria meningitidis 44/76-A

44.527

98.771

0.44
  pilC Vibrio cholerae strain A1552

43.35

99.754

0.432
  pilC Vibrio campbellii strain DS40M4

41.96

97.789

0.41
  pilC Thermus thermophilus HB27

36.118

100

0.361