Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | KCX70_RS04800 | Genome accession | NZ_CP073105 |
| Coordinates | 1001914..1002780 (+) | Length | 288 a.a. |
| NCBI ID | WP_102846952.1 | Uniprot ID | A0A2N8SQB6 |
| Organism | Stutzerimonas stutzeri strain F2 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 996914..1007780
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KCX70_RS04775 (KCX70_04775) | - | 996954..997754 (-) | 801 | WP_212619455.1 | hypothetical protein | - |
| KCX70_RS04780 (KCX70_04780) | - | 997814..998239 (-) | 426 | WP_212619456.1 | hypothetical protein | - |
| KCX70_RS23435 (KCX70_04785) | pilA | 998259..998444 (-) | 186 | WP_156716308.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| KCX70_RS04790 (KCX70_04790) | pilB | 998985..1000691 (+) | 1707 | WP_212619457.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| KCX70_RS04795 (KCX70_04795) | pilC | 1000694..1001917 (+) | 1224 | WP_212619458.1 | type II secretion system F family protein | Machinery gene |
| KCX70_RS04800 (KCX70_04800) | pilD | 1001914..1002780 (+) | 867 | WP_102846952.1 | A24 family peptidase | Machinery gene |
| KCX70_RS04805 (KCX70_04805) | coaE | 1003014..1003622 (+) | 609 | WP_212619459.1 | dephospho-CoA kinase | - |
| KCX70_RS04810 (KCX70_04810) | yacG | 1003619..1003816 (+) | 198 | WP_102846950.1 | DNA gyrase inhibitor YacG | - |
| KCX70_RS04815 (KCX70_04815) | - | 1003848..1004540 (-) | 693 | WP_102846949.1 | energy-coupling factor ABC transporter permease | - |
| KCX70_RS04820 (KCX70_04820) | - | 1004640..1005677 (-) | 1038 | WP_212619460.1 | NADP(H)-dependent aldo-keto reductase | - |
| KCX70_RS04825 (KCX70_04825) | rplM | 1006049..1006477 (+) | 429 | WP_019342644.1 | 50S ribosomal protein L13 | - |
| KCX70_RS04830 (KCX70_04830) | rpsI | 1006492..1006884 (+) | 393 | WP_021209313.1 | 30S ribosomal protein S9 | - |
| KCX70_RS04835 (KCX70_04835) | petA | 1007137..1007730 (+) | 594 | WP_212619461.1 | ubiquinol-cytochrome c reductase iron-sulfur subunit | - |
Sequence
Protein
Download Length: 288 a.a. Molecular weight: 31677.55 Da Isoelectric Point: 7.1246
>NTDB_id=557944 KCX70_RS04800 WP_102846952.1 1001914..1002780(+) (pilD) [Stutzerimonas stutzeri strain F2]
MSGIFLLASNPLAFVLCATVLGLLVGSFLNVVIHRLPIMMQRDWRAQAREFLELSAEPASTFNLVLPHSHCPHCDHEIRP
WENIPLVSWLALRGKCSSCRAPISKRYPLVELLCGLLSGYVAWHFGFSWQAGAMLLLTWGLLAMSMIDVDHQLLPDSIVL
PLLWVGLIVNDFGLFAALSDALWGAVAGYLALWSVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVGA
VLGSILLRVQKADSGTAIPFGPYLAIAGWIALLWGEQITASYLHFARF
MSGIFLLASNPLAFVLCATVLGLLVGSFLNVVIHRLPIMMQRDWRAQAREFLELSAEPASTFNLVLPHSHCPHCDHEIRP
WENIPLVSWLALRGKCSSCRAPISKRYPLVELLCGLLSGYVAWHFGFSWQAGAMLLLTWGLLAMSMIDVDHQLLPDSIVL
PLLWVGLIVNDFGLFAALSDALWGAVAGYLALWSVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVGA
VLGSILLRVQKADSGTAIPFGPYLAIAGWIALLWGEQITASYLHFARF
Nucleotide
Download Length: 867 bp
>NTDB_id=557944 KCX70_RS04800 WP_102846952.1 1001914..1002780(+) (pilD) [Stutzerimonas stutzeri strain F2]
ATGAGCGGTATATTTTTGCTGGCCAGCAACCCGCTGGCCTTTGTTTTATGTGCAACCGTCCTGGGCCTATTGGTCGGCAG
TTTCCTCAACGTCGTCATCCATCGCTTGCCGATCATGATGCAGCGGGATTGGCGGGCGCAGGCTCGCGAGTTTCTCGAGC
TGTCGGCCGAACCTGCCTCTACGTTCAATCTGGTATTGCCCCATTCTCATTGCCCACATTGCGACCATGAGATTCGTCCG
TGGGAAAACATTCCATTGGTGAGCTGGTTGGCCTTGCGCGGGAAGTGCTCTTCTTGCCGCGCACCGATCAGTAAACGTTA
TCCACTGGTCGAACTGCTATGCGGGTTGTTATCCGGCTATGTGGCCTGGCATTTCGGCTTCTCCTGGCAGGCCGGTGCGA
TGTTGCTGCTGACCTGGGGATTGCTGGCGATGAGCATGATCGATGTCGATCATCAGCTTTTGCCGGATTCCATCGTGCTG
CCGCTGCTCTGGGTGGGGTTGATCGTCAATGACTTCGGGTTGTTCGCTGCGCTGTCCGACGCGTTGTGGGGTGCAGTCGC
TGGCTATCTCGCCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGGTGACCGGTAAGGAAGGCATGGGCTATGGCGACTTCA
AACTGCTGGCGATGCTTGGCGCCTGGGGAGGATGGCAGGTTCTGCCGTTGACCATTCTGTTGTCGTCCGTGGTGGGCGCA
GTGCTGGGTAGCATCTTGCTGCGCGTGCAGAAGGCGGACAGCGGTACGGCGATTCCCTTCGGACCGTATCTGGCTATTGC
GGGGTGGATTGCGTTGCTCTGGGGTGAGCAGATTACCGCGAGCTATCTGCACTTTGCTCGATTCTGA
ATGAGCGGTATATTTTTGCTGGCCAGCAACCCGCTGGCCTTTGTTTTATGTGCAACCGTCCTGGGCCTATTGGTCGGCAG
TTTCCTCAACGTCGTCATCCATCGCTTGCCGATCATGATGCAGCGGGATTGGCGGGCGCAGGCTCGCGAGTTTCTCGAGC
TGTCGGCCGAACCTGCCTCTACGTTCAATCTGGTATTGCCCCATTCTCATTGCCCACATTGCGACCATGAGATTCGTCCG
TGGGAAAACATTCCATTGGTGAGCTGGTTGGCCTTGCGCGGGAAGTGCTCTTCTTGCCGCGCACCGATCAGTAAACGTTA
TCCACTGGTCGAACTGCTATGCGGGTTGTTATCCGGCTATGTGGCCTGGCATTTCGGCTTCTCCTGGCAGGCCGGTGCGA
TGTTGCTGCTGACCTGGGGATTGCTGGCGATGAGCATGATCGATGTCGATCATCAGCTTTTGCCGGATTCCATCGTGCTG
CCGCTGCTCTGGGTGGGGTTGATCGTCAATGACTTCGGGTTGTTCGCTGCGCTGTCCGACGCGTTGTGGGGTGCAGTCGC
TGGCTATCTCGCCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGGTGACCGGTAAGGAAGGCATGGGCTATGGCGACTTCA
AACTGCTGGCGATGCTTGGCGCCTGGGGAGGATGGCAGGTTCTGCCGTTGACCATTCTGTTGTCGTCCGTGGTGGGCGCA
GTGCTGGGTAGCATCTTGCTGCGCGTGCAGAAGGCGGACAGCGGTACGGCGATTCCCTTCGGACCGTATCTGGCTATTGC
GGGGTGGATTGCGTTGCTCTGGGGTGAGCAGATTACCGCGAGCTATCTGCACTTTGCTCGATTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
58.333 |
95.833 |
0.559 |
| pilD | Vibrio campbellii strain DS40M4 |
56.522 |
95.833 |
0.542 |
| pilD | Acinetobacter nosocomialis M2 |
50.181 |
96.181 |
0.483 |
| pilD | Neisseria gonorrhoeae MS11 |
52.471 |
91.319 |
0.479 |
| pilD | Acinetobacter baumannii D1279779 |
49.819 |
96.181 |
0.479 |