Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   INT76_RS06150 Genome accession   NZ_CP073084
Coordinates   1218703..1219098 (-) Length   131 a.a.
NCBI ID   WP_212569649.1    Uniprot ID   -
Organism   Streptococcus oriscaviae strain HKU75     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1213703..1224098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INT76_RS06130 (INT76_06130) - 1214619..1215305 (-) 687 WP_212569646.1 response regulator transcription factor -
  INT76_RS06135 (INT76_06135) - 1215298..1216617 (-) 1320 WP_212573033.1 sensor histidine kinase -
  INT76_RS06140 (INT76_06140) - 1216617..1217588 (-) 972 WP_212569647.1 substrate-binding domain-containing protein -
  INT76_RS06145 (INT76_06145) - 1217578..1218375 (-) 798 WP_212569648.1 Cof-type HAD-IIB family hydrolase -
  INT76_RS06150 (INT76_06150) ssbA 1218703..1219098 (-) 396 WP_212569649.1 single-stranded DNA-binding protein Machinery gene
  INT76_RS06155 (INT76_06155) - 1219180..1220118 (+) 939 WP_212569650.1 alpha/beta hydrolase -
  INT76_RS06160 (INT76_06160) ytpR 1220177..1220800 (-) 624 WP_212569651.1 YtpR family tRNA-binding protein -
  INT76_RS06165 (INT76_06165) - 1220797..1221117 (-) 321 WP_212569652.1 thioredoxin family protein -
  INT76_RS06170 (INT76_06170) - 1221114..1221398 (-) 285 WP_212569653.1 DUF4651 domain-containing protein -
  INT76_RS06175 (INT76_06175) pepA 1221574..1222644 (+) 1071 WP_212569654.1 glutamyl aminopeptidase -
  INT76_RS06180 (INT76_06180) - 1222681..1223922 (-) 1242 WP_212569655.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14772.60 Da        Isoelectric Point: 5.3058

>NTDB_id=557842 INT76_RS06150 WP_212569649.1 1218703..1219098(-) (ssbA) [Streptococcus oriscaviae strain HKU75]
MYNKVIAIGRLTATPELTQTKSGKNLSRVTVAVNRRFKSENGEREADFINVIFWGKLAETLVSYASKGSLLSVDGELRTR
KYEKDGSNHYVTEVLGQSFQLLESRAQRAMRENNSGEDLADLILDEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=557842 INT76_RS06150 WP_212569649.1 1218703..1219098(-) (ssbA) [Streptococcus oriscaviae strain HKU75]
ATGTACAATAAAGTAATTGCTATTGGCCGCTTAACAGCCACACCTGAACTTACCCAGACCAAGAGTGGAAAAAATTTGAG
TCGCGTCACCGTTGCAGTAAACAGACGGTTCAAGTCGGAAAACGGTGAGCGCGAAGCAGATTTCATCAATGTTATTTTCT
GGGGCAAGTTGGCCGAAACACTCGTTTCCTATGCCAGCAAGGGAAGCCTGCTGTCTGTTGATGGTGAGCTACGCACCCGC
AAATATGAAAAAGATGGCAGCAACCATTATGTGACAGAGGTTTTGGGTCAATCCTTCCAGCTACTAGAAAGTCGTGCCCA
ACGTGCCATGCGCGAAAACAATAGCGGCGAAGATTTGGCGGACTTAATCTTGGATGAGGAGGAACTTCCCTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae D39

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae R6

72.519

100

0.725
  ssbB/cilA Streptococcus mitis NCTC 12261

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae TIGR4

72.519

100

0.725
  ssbB/cilA Streptococcus mitis SK321

71.756

100

0.718
  ssbB Lactococcus lactis subsp. cremoris KW2

63.393

85.496

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

47.788

86.26

0.412
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.113

80.916

0.389
  ssbB Bacillus subtilis subsp. subtilis str. 168

44.444

82.443

0.366