Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   L1P13_RS15670 Genome accession   NZ_CP091024
Coordinates   3136019..3136648 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain STEC379     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3131019..3141648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1P13_RS15655 helD 3131261..3133315 (-) 2055 WP_000420536.1 DNA helicase IV -
  L1P13_RS15660 yccF 3133438..3133884 (+) 447 WP_001261235.1 YccF domain-containing protein -
  L1P13_RS15665 yccS 3133894..3136056 (+) 2163 WP_000875015.1 YccS family putative transporter -
  L1P13_RS15670 sxy/tfoX 3136019..3136648 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  L1P13_RS15675 sulA 3136867..3137376 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  L1P13_RS15680 ompA 3137733..3138785 (+) 1053 WP_000750419.1 porin OmpA -
  L1P13_RS15685 matP 3138860..3139312 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  L1P13_RS15690 ycbZ 3139498..3141258 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=557639 L1P13_RS15670 WP_000839153.1 3136019..3136648(-) (sxy/tfoX) [Escherichia coli strain STEC379]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=557639 L1P13_RS15670 WP_000839153.1 3136019..3136648(-) (sxy/tfoX) [Escherichia coli strain STEC379]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1