Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   J9870_RS24875 Genome accession   NZ_CP072913
Coordinates   5727006..5728223 (+) Length   405 a.a.
NCBI ID   WP_210640982.1    Uniprot ID   -
Organism   Pseudomonas sp. Tri1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5722006..5733223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9870_RS24850 - 5722264..5722560 (+) 297 WP_210640977.1 DUF2845 domain-containing protein -
  J9870_RS24855 - 5722663..5723625 (-) 963 WP_210639263.1 transposase -
  J9870_RS24860 - 5724045..5724398 (-) 354 WP_003205664.1 BON domain-containing protein -
  J9870_RS24865 pilA 5724668..5725078 (-) 411 WP_210640979.1 pilin Machinery gene
  J9870_RS24870 pilB 5725303..5727003 (+) 1701 WP_210640980.1 type IV-A pilus assembly ATPase PilB Machinery gene
  J9870_RS24875 pilC 5727006..5728223 (+) 1218 WP_210640982.1 type II secretion system F family protein Machinery gene
  J9870_RS24880 pilD 5728225..5729094 (+) 870 WP_210640984.1 A24 family peptidase Machinery gene
  J9870_RS24885 coaE 5729106..5729729 (+) 624 WP_210640986.1 dephospho-CoA kinase -
  J9870_RS24890 yacG 5729726..5729932 (+) 207 WP_003205675.1 DNA gyrase inhibitor YacG -
  J9870_RS24895 - 5729979..5730194 (-) 216 WP_210640988.1 hypothetical protein -
  J9870_RS24900 - 5730258..5730944 (-) 687 WP_210640990.1 energy-coupling factor ABC transporter permease -
  J9870_RS24905 - 5731019..5731432 (-) 414 WP_210640992.1 tautomerase family protein -
  J9870_RS24910 - 5731650..5732477 (+) 828 WP_246883052.1 LysR substrate-binding domain-containing protein -
  J9870_RS24915 - 5732546..5733172 (+) 627 WP_003205682.1 DUF1780 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44334.03 Da        Isoelectric Point: 9.8765

>NTDB_id=556821 J9870_RS24875 WP_210640982.1 5727006..5728223(+) (pilC) [Pseudomonas sp. Tri1]
MAVKAVKTDVYTWEGKDRKGTKMSGELTGQSPALIKAQLRKQGINPEKVRKKSTSIFSKGKRIKPLDIALFTRQMATMLK
AGVPLLQAFDIIGEGFDNANMRKLVEEVKQEVAAGNSFAASLRKCPQYFDDLYCNLVDAGEQAGALDTLLDRVATYKEKS
EALKAKIKKAMTYPAAVVLVAAVVTGILLVKVVPQFESVFSGFGAQLPAFTVMVIGLSEFMQQWWWMLLGGLVGSFFAVK
YALRRSEAFRDWRDKWLLKLPLIGTLMYKSAVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFKRAVQRIKQDVSTGM
QLNFSMRTSGIFPNLAIQMTAIGEESGALDDMLDKVASFYEAEVDNLVDNLTSLMEPFIMVVLGVVVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=556821 J9870_RS24875 WP_210640982.1 5727006..5728223(+) (pilC) [Pseudomonas sp. Tri1]
ATGGCGGTCAAAGCAGTCAAAACCGATGTCTACACTTGGGAAGGCAAAGACCGCAAAGGCACAAAAATGAGCGGCGAGCT
GACCGGTCAGAGCCCGGCCCTGATCAAGGCTCAATTGCGTAAACAGGGCATCAACCCGGAGAAGGTACGCAAGAAGTCCA
CCTCGATTTTCAGCAAGGGCAAACGCATCAAGCCGTTGGATATCGCCCTCTTCACCCGCCAGATGGCCACGATGCTCAAG
GCCGGCGTACCTCTGTTGCAAGCGTTCGACATCATTGGCGAAGGCTTCGACAACGCCAACATGCGCAAGCTGGTGGAAGA
GGTGAAACAGGAAGTCGCCGCTGGCAACAGCTTCGCCGCATCGCTGCGCAAGTGCCCGCAATATTTCGACGACCTGTACT
GCAACCTGGTGGACGCCGGTGAACAGGCCGGCGCCCTGGACACACTGCTGGACCGGGTCGCGACTTACAAGGAAAAGAGC
GAAGCGCTCAAGGCCAAGATCAAGAAAGCCATGACCTATCCAGCGGCCGTCGTTCTCGTCGCCGCGGTGGTCACGGGGAT
CCTGCTGGTCAAGGTGGTGCCGCAGTTCGAGTCGGTGTTCTCCGGGTTCGGTGCGCAGTTGCCGGCCTTCACGGTGATGG
TCATCGGCCTTTCGGAGTTCATGCAGCAATGGTGGTGGATGCTGCTCGGCGGGCTGGTGGGTAGTTTTTTTGCGGTGAAA
TACGCCCTCAGGCGCTCCGAGGCCTTTCGCGACTGGCGCGATAAATGGCTGCTCAAGCTGCCTCTGATAGGCACCCTGAT
GTACAAATCCGCCGTGGCCCGGTACGCCCGCACGCTCTCCACCACATTCGCCGCCGGCGTGCCGCTGGTGGAAGCCCTGG
ACTCGGTCTCGGGCGCCACCGGCAATGTGGTGTTCAAGCGCGCGGTGCAGCGCATCAAGCAAGACGTCTCGACCGGCATG
CAGTTGAATTTCTCCATGCGTACCTCAGGGATCTTTCCGAACCTGGCGATCCAGATGACCGCCATCGGTGAAGAATCCGG
TGCGCTGGATGACATGCTCGACAAGGTGGCGAGTTTTTATGAGGCCGAAGTGGACAATCTGGTGGACAACCTCACCAGCC
TGATGGAACCCTTCATCATGGTGGTCCTGGGGGTGGTCGTCGGTGGCCTGGTGGTTGCCATGTACCTGCCCATCTTTCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

74.815

100

0.748
  pilC Acinetobacter baumannii D1279779

57.598

100

0.58
  pilC Acinetobacter baylyi ADP1

58.603

99.012

0.58
  pilC Legionella pneumophila strain ERS1305867

54.798

97.778

0.536
  pilC Vibrio campbellii strain DS40M4

43.939

97.778

0.43
  pilC Vibrio cholerae strain A1552

42.677

97.778

0.417
  pilG Neisseria gonorrhoeae MS11

42.04

99.259

0.417
  pilG Neisseria meningitidis 44/76-A

41.791

99.259

0.415
  pilC Thermus thermophilus HB27

37.406

99.012

0.37