Detailed information NTG0556822

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: J9870_RS24880
• Genome accession: NZ_CP072913
• Coordinates: 5728225..5729094 (+)
• Length: 289 a.a.
• NCBI ID: WP_210640984.1
• Uniprot ID: -
• Organism: Pseudomonas sp. Tri1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5723225..5734094

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J9870_RS24860	-	5724045..5724398 (-)	354	WP_003205664.1	BON domain-containing protein	-
J9870_RS24865	pilA	5724668..5725078 (-)	411	WP_210640979.1	pilin	Machinery gene
J9870_RS24870	pilB	5725303..5727003 (+)	1701	WP_210640980.1	type IV-A pilus assembly ATPase PilB	Machinery gene
J9870_RS24875	pilC	5727006..5728223 (+)	1218	WP_210640982.1	type II secretion system F family protein	Machinery gene
J9870_RS24880	pilD	5728225..5729094 (+)	870	WP_210640984.1	A24 family peptidase	Machinery gene
J9870_RS24885	coaE	5729106..5729729 (+)	624	WP_210640986.1	dephospho-CoA kinase	-
J9870_RS24890	yacG	5729726..5729932 (+)	207	WP_003205675.1	DNA gyrase inhibitor YacG	-
J9870_RS24895	-	5729979..5730194 (-)	216	WP_210640988.1	hypothetical protein	-
J9870_RS24900	-	5730258..5730944 (-)	687	WP_210640990.1	energy-coupling factor ABC transporter permease	-
J9870_RS24905	-	5731019..5731432 (-)	414	WP_210640992.1	tautomerase family protein	-
J9870_RS24910	-	5731650..5732477 (+)	828	WP_246883052.1	LysR substrate-binding domain-containing protein	-
J9870_RS24915	-	5732546..5733172 (+)	627	WP_003205682.1	DUF1780 domain-containing protein	-
J9870_RS24920	-	5733169..5733696 (+)	528	WP_210640996.1	MOSC domain-containing protein	-
J9870_RS24925	-	5733749..5733922 (+)	174	WP_076386361.1	DUF3094 family protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31948.15 Da
• Isoelectric Point: 8.3445

>NTDB_id=556822 J9870_RS24880 WP_210640984.1 5728225..5729094(+) (pilD) [Pseudomonas sp. Tri1]
MPLTDFFVLYPLAFVLTALLLGLIVGSFLNVLVWRLPKMLTREWRLQAHDLLGLPAEAPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLILRGRCSNCAAPIGRRYPLTELACGALSAFVAWHFGFGWQAVMVMVLSWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFGLFVSLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVVGVIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWRSVGF

Nucleotide

• Length: 870 bp

>NTDB_id=556822 J9870_RS24880 WP_210640984.1 5728225..5729094(+) (pilD) [Pseudomonas sp. Tri1]
ATGCCCCTGACTGACTTCTTCGTGCTGTATCCCCTGGCCTTCGTGCTCACTGCGTTATTGCTTGGATTGATCGTCGGCAG
TTTCCTCAATGTCCTGGTGTGGCGCCTGCCAAAGATGCTCACCCGCGAATGGCGCCTGCAAGCCCACGACCTGCTGGGCC
TGCCGGCCGAAGCCCCCGGCCCGGTCTACAACCTGATGCTGCCCCATTCCCAGTGCCCCCACTGCGGCCATCGCATCCGC
GCCTGGGAAAACATCCCGTTGCTGAGCTACCTGATATTGCGCGGTCGCTGTTCCAACTGCGCCGCCCCCATTGGCAGGCG
CTACCCGCTGACCGAACTGGCCTGCGGCGCCTTGTCAGCGTTCGTCGCCTGGCACTTCGGCTTTGGCTGGCAGGCCGTGA
TGGTGATGGTATTGAGCTGGGGCCTGCTGGGCATGAGCCTGATCGATGCCGAACATCAATTACTGCCCGATACCCTGGTG
CTGCCGTTGTTGTGGCTGGGTTTGATCGTCAACAGCTTCGGGCTGTTCGTTTCCTTGAATCAGGCGATGTGGGGCGCGGT
AGCCGGCTATCTGGCGCTGTGGTCGGTGTTCTGGGTATTCAAATTGATCACCGGCAAGGAAGGCATGGGCTACGGGGATT
TCAAGCTGCTGGCGATGCTGGGGGCCTGGGGTGGCTGGCAGATCCTGCCACTGACCTTGCTGCTGTCGTCGCTGGTGGGG
GCCGTTGTCGGGGTTATTGTGCTGCGCCTGCGTGACGCTCCGGGATCGACGCAGATCCCCTTCGGACCCTATCTGGCAAT
TGCTGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCGGTCTGTCGGTTTCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.169	98.27	0.522
pilD	Vibrio campbellii strain DS40M4	51.228	98.616	0.505
pilD	Neisseria gonorrhoeae MS11	47.038	99.308	0.467
pilD	Acinetobacter baumannii D1279779	46.975	97.232	0.457
pilD	Acinetobacter nosocomialis M2	46.975	97.232	0.457