Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   IUD23_RS05875 Genome accession   NZ_CP090316
Coordinates   1311720..1312154 (-) Length   144 a.a.
NCBI ID   WP_038228615.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. morus strain Riv16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1306720..1317154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUD23_RS05865 (IUD23_05865) - 1307641..1309053 (+) 1413 WP_020851962.1 sigma-54 dependent transcriptional regulator -
  IUD23_RS05870 (IUD23_05870) pilB 1309147..1310880 (-) 1734 WP_012338105.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IUD23_RS05875 (IUD23_05875) pilA 1311720..1312154 (-) 435 WP_038228615.1 pilin Machinery gene
  IUD23_RS05880 (IUD23_05880) - 1312987..1313214 (+) 228 WP_012338102.1 hypothetical protein -
  IUD23_RS05885 (IUD23_05885) pilA 1313459..1313905 (-) 447 WP_040123054.1 pilin Machinery gene
  IUD23_RS05890 (IUD23_05890) pilC 1314346..1315548 (+) 1203 WP_010894959.1 type II secretion system F family protein Machinery gene
  IUD23_RS05895 (IUD23_05895) pilD 1315555..1316418 (+) 864 WP_004084594.1 A24 family peptidase Machinery gene
  IUD23_RS05900 (IUD23_05900) coaE 1316430..1317053 (+) 624 WP_020851236.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 14996.38 Da        Isoelectric Point: 8.5024

>NTDB_id=553575 IUD23_RS05875 WP_038228615.1 1311720..1312154(-) (pilA) [Xylella fastidiosa subsp. morus strain Riv16]
MKKQQGFTLIELMIVIAIIAILAAIALPMYQNYVARSQVTAGLAEITPSKAQAEIRIAEARPTTVSTDIGLRTPTSRCAV
AVDIKTDAESTITCTLIGNTQVNGQTIKLSRAVDNAAGTGGLWTCTTTVAEALAPGGCTSTKKS

Nucleotide


Download         Length: 435 bp        

>NTDB_id=553575 IUD23_RS05875 WP_038228615.1 1311720..1312154(-) (pilA) [Xylella fastidiosa subsp. morus strain Riv16]
ATGAAAAAGCAACAAGGCTTCACTTTGATCGAGCTGATGATCGTCATTGCGATCATTGCCATCCTGGCCGCGATCGCTCT
GCCCATGTACCAAAATTATGTCGCCAGGTCTCAAGTCACAGCGGGACTGGCCGAAATTACACCCAGCAAAGCACAAGCCG
AAATCCGTATTGCCGAGGCAAGACCAACAACTGTTTCGACCGATATCGGACTGCGCACCCCAACGTCTCGTTGCGCCGTT
GCTGTCGACATCAAGACCGATGCTGAAAGCACAATTACATGTACGCTTATTGGTAATACCCAAGTCAACGGTCAAACCAT
TAAGTTGAGTCGCGCCGTCGATAACGCCGCAGGCACAGGGGGTCTGTGGACCTGTACCACAACCGTTGCCGAAGCGTTGG
CACCAGGAGGCTGCACTTCGACCAAGAAGAGCTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(35-139)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter baumannii strain A118

46.897

100

0.472
  pilA/pilAI Pseudomonas stutzeri DSM 10701

47.887

98.611

0.472
  pilA/pilAII Pseudomonas stutzeri DSM 10701

47.143

97.222

0.458
  pilA Pseudomonas aeruginosa PAK

41.026

100

0.444
  pilA Vibrio cholerae C6706

38.854

100

0.424
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

38.854

100

0.424
  pilA Vibrio cholerae strain A1552

38.854

100

0.424
  pilA Ralstonia pseudosolanacearum GMI1000

37.179

100

0.403
  pilA Vibrio parahaemolyticus RIMD 2210633

39.286

97.222

0.382
  comP Acinetobacter baylyi ADP1

35.333

100

0.368