Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | IUD23_RS05885 | Genome accession | NZ_CP090316 |
| Coordinates | 1313459..1313905 (-) | Length | 148 a.a. |
| NCBI ID | WP_040123054.1 | Uniprot ID | - |
| Organism | Xylella fastidiosa subsp. morus strain Riv16 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1308459..1318905
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IUD23_RS05870 (IUD23_05870) | pilB | 1309147..1310880 (-) | 1734 | WP_012338105.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| IUD23_RS05875 (IUD23_05875) | pilA | 1311720..1312154 (-) | 435 | WP_038228615.1 | pilin | Machinery gene |
| IUD23_RS05880 (IUD23_05880) | - | 1312987..1313214 (+) | 228 | WP_012338102.1 | hypothetical protein | - |
| IUD23_RS05885 (IUD23_05885) | pilA | 1313459..1313905 (-) | 447 | WP_040123054.1 | pilin | Machinery gene |
| IUD23_RS05890 (IUD23_05890) | pilC | 1314346..1315548 (+) | 1203 | WP_010894959.1 | type II secretion system F family protein | Machinery gene |
| IUD23_RS05895 (IUD23_05895) | pilD | 1315555..1316418 (+) | 864 | WP_004084594.1 | A24 family peptidase | Machinery gene |
| IUD23_RS05900 (IUD23_05900) | coaE | 1316430..1317053 (+) | 624 | WP_020851236.1 | dephospho-CoA kinase | - |
| IUD23_RS05905 (IUD23_05905) | - | 1317320..1318657 (-) | 1338 | WP_004090387.1 | HAMP domain-containing sensor histidine kinase | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 15385.62 Da Isoelectric Point: 8.4970
>NTDB_id=553576 IUD23_RS05885 WP_040123054.1 1313459..1313905(-) (pilA) [Xylella fastidiosa subsp. morus strain Riv16]
MKKQQGFNLIELMIVIAIIAVLAAIALPMYQNYVARSQLTAALADITPGKVQAESLIADGKVTSNASDIGLRTDTTRCGI
TVKVEAAGTANITCKVKGNSQVSDKTIAWDRSPDNSAGTNGVNNGGLWTCSTNVTSDALKPSGCIATK
MKKQQGFNLIELMIVIAIIAVLAAIALPMYQNYVARSQLTAALADITPGKVQAESLIADGKVTSNASDIGLRTDTTRCGI
TVKVEAAGTANITCKVKGNSQVSDKTIAWDRSPDNSAGTNGVNNGGLWTCSTNVTSDALKPSGCIATK
Nucleotide
Download Length: 447 bp
>NTDB_id=553576 IUD23_RS05885 WP_040123054.1 1313459..1313905(-) (pilA) [Xylella fastidiosa subsp. morus strain Riv16]
ATGAAAAAGCAACAAGGTTTTAACTTAATCGAACTAATGATCGTCATTGCAATCATTGCTGTTCTGGCGGCCATCGCTCT
GCCCATGTACCAAAATTATGTTGCCAGATCCCAACTCACTGCGGCACTTGCCGACATCACGCCGGGCAAAGTGCAAGCCG
AGTCTCTGATTGCTGATGGGAAGGTTACATCCAATGCGAGTGATATCGGTCTGCGTACCGACACCACTCGTTGTGGAATT
ACCGTTAAAGTCGAGGCCGCTGGCACCGCCAACATCACATGCAAAGTTAAGGGCAACTCTCAAGTCAGTGATAAAACCAT
CGCTTGGGATCGTAGCCCCGATAACTCTGCAGGCACCAATGGCGTCAATAATGGAGGTTTGTGGACCTGCTCAACCAACG
TCACCTCCGATGCACTGAAACCTTCCGGCTGCATTGCCACTAAATAA
ATGAAAAAGCAACAAGGTTTTAACTTAATCGAACTAATGATCGTCATTGCAATCATTGCTGTTCTGGCGGCCATCGCTCT
GCCCATGTACCAAAATTATGTTGCCAGATCCCAACTCACTGCGGCACTTGCCGACATCACGCCGGGCAAAGTGCAAGCCG
AGTCTCTGATTGCTGATGGGAAGGTTACATCCAATGCGAGTGATATCGGTCTGCGTACCGACACCACTCGTTGTGGAATT
ACCGTTAAAGTCGAGGCCGCTGGCACCGCCAACATCACATGCAAAGTTAAGGGCAACTCTCAAGTCAGTGATAAAACCAT
CGCTTGGGATCGTAGCCCCGATAACTCTGCAGGCACCAATGGCGTCAATAATGGAGGTTTGTGGACCTGCTCAACCAACG
TCACCTCCGATGCACTGAAACCTTCCGGCTGCATTGCCACTAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
40 |
100 |
0.419 |
| pilA | Vibrio cholerae strain A1552 |
40 |
100 |
0.419 |
| pilA | Vibrio cholerae C6706 |
40 |
100 |
0.419 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
41.497 |
99.324 |
0.412 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40.816 |
99.324 |
0.405 |
| pilA | Acinetobacter baumannii strain A118 |
39.333 |
100 |
0.399 |
| pilA | Pseudomonas aeruginosa PAK |
36.478 |
100 |
0.392 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
36.735 |
99.324 |
0.365 |