Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DESDI_RS17050 Genome accession   NC_019903
Coordinates   3607048..3607458 (-) Length   136 a.a.
NCBI ID   WP_015263851.1    Uniprot ID   L0FCF1
Organism   Desulfitobacterium dichloroeliminans LMG P-21439     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3602048..3612458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DESDI_RS17025 (Desdi_3509) lonC 3602735..3604783 (-) 2049 WP_015263846.1 Lon family ATP-dependent protease -
  DESDI_RS17030 (Desdi_3510) rplI 3604810..3605256 (-) 447 WP_015263847.1 50S ribosomal protein L9 -
  DESDI_RS17035 (Desdi_3511) - 3605302..3606258 (-) 957 WP_015263848.1 DUF2232 domain-containing protein -
  DESDI_RS17040 (Desdi_3512) - 3606341..3606664 (-) 324 WP_041219575.1 MazG-like family protein -
  DESDI_RS17045 (Desdi_3513) rpsR 3606765..3606995 (-) 231 WP_015263850.1 30S ribosomal protein S18 -
  DESDI_RS17050 (Desdi_3514) ssbA 3607048..3607458 (-) 411 WP_015263851.1 single-stranded DNA-binding protein Machinery gene
  DESDI_RS17055 (Desdi_3515) rpsF 3607474..3607761 (-) 288 WP_015263852.1 30S ribosomal protein S6 -
  DESDI_RS17060 (Desdi_3516) ychF 3607909..3609009 (-) 1101 WP_015263853.1 redox-regulated ATPase YchF -
  DESDI_RS17065 (Desdi_3517) - 3609116..3609316 (-) 201 WP_015263854.1 DUF951 domain-containing protein -
  DESDI_RS17070 (Desdi_3518) - 3609440..3610219 (-) 780 WP_015263855.1 CvpA family protein -
  DESDI_RS17075 (Desdi_3519) - 3610437..3611063 (-) 627 WP_015263856.1 CBS and ACT domain-containing protein -
  DESDI_RS17080 (Desdi_3520) - 3611191..3611592 (-) 402 WP_041219577.1 tetratricopeptide repeat protein -
  DESDI_RS17085 (Desdi_3521) hypB 3611582..3612265 (-) 684 WP_015263858.1 hydrogenase nickel incorporation protein HypB -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14970.72 Da        Isoelectric Point: 5.7427

>NTDB_id=55350 DESDI_RS17050 WP_015263851.1 3607048..3607458(-) (ssbA) [Desulfitobacterium dichloroeliminans LMG P-21439]
MLNRVVLIGRLTKDPELRYTPNGVAVASFTLAVDRNFKNASGEREADFIPCVVYRQLAELCANYLSKGKLAAVDGRLQVR
TYDGQDGQRRWVYEIVAENVRFLSPKDGNSGHGSSSGSSDVGTYGHEVSLDDDIPF

Nucleotide


Download         Length: 411 bp        

>NTDB_id=55350 DESDI_RS17050 WP_015263851.1 3607048..3607458(-) (ssbA) [Desulfitobacterium dichloroeliminans LMG P-21439]
ATGTTGAATCGCGTCGTTTTAATAGGCCGTTTAACGAAAGACCCCGAGTTACGTTATACCCCGAATGGGGTTGCTGTAGC
CAGCTTTACACTTGCTGTTGATCGCAACTTCAAGAATGCTAGCGGGGAACGGGAAGCGGATTTTATTCCATGTGTGGTAT
ATAGACAGCTGGCTGAGCTGTGTGCGAATTATCTTTCCAAAGGGAAATTAGCAGCTGTCGACGGGCGGTTGCAGGTTCGT
ACCTATGATGGTCAAGATGGACAGCGTCGTTGGGTTTATGAGATTGTTGCTGAAAATGTACGATTCCTCAGCCCTAAAGA
CGGAAATTCCGGACATGGATCATCCTCAGGTTCCAGTGATGTTGGGACATATGGTCATGAAGTAAGCTTAGATGACGATA
TCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB L0FCF1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

70.093

78.676

0.551
  ssb Latilactobacillus sakei subsp. sakei 23K

55.66

77.941

0.434
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.717

77.941

0.426
  ssbB Streptococcus sobrinus strain NIDR 6715-7

38.971

100

0.39
  ssbB/cilA Streptococcus pneumoniae TIGR4

38.235

100

0.382
  ssbB/cilA Streptococcus mitis SK321

38.235

100

0.382
  ssbB/cilA Streptococcus mitis NCTC 12261

37.5

100

0.375
  ssbB/cilA Streptococcus pneumoniae Rx1

37.5

100

0.375
  ssbB/cilA Streptococcus pneumoniae D39

37.5

100

0.375
  ssbB/cilA Streptococcus pneumoniae R6

37.5

100

0.375
  ssb Neisseria meningitidis MC58

43.75

82.353

0.36
  ssb Neisseria gonorrhoeae MS11

43.75

82.353

0.36

Multiple sequence alignment