Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   J4854_RS01225 Genome accession   NZ_CP072329
Coordinates   209552..209947 (+) Length   131 a.a.
NCBI ID   WP_003004675.1    Uniprot ID   A0A930RSB0
Organism   Streptococcus lactarius strain CCUG 66490     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 204552..214947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4854_RS01200 (J4854_01200) - 205028..206512 (-) 1485 WP_200772872.1 DUF1846 domain-containing protein -
  J4854_RS01205 (J4854_01205) pepA 207006..208070 (-) 1065 WP_200772873.1 glutamyl aminopeptidase -
  J4854_RS01210 (J4854_01210) - 208214..208504 (+) 291 WP_003004245.1 DUF4651 domain-containing protein -
  J4854_RS01215 (J4854_01215) - 208501..208818 (+) 318 WP_200772874.1 thioredoxin family protein -
  J4854_RS01220 (J4854_01220) ytpR 208828..209454 (+) 627 WP_200772875.1 YtpR family tRNA-binding protein -
  J4854_RS01225 (J4854_01225) ssbB/cilA 209552..209947 (+) 396 WP_003004675.1 single-stranded DNA-binding protein Machinery gene
  J4854_RS01230 (J4854_01230) groES 210461..210742 (+) 282 WP_200772876.1 co-chaperone GroES -
  J4854_RS01235 (J4854_01235) groL 210764..212389 (+) 1626 WP_200772877.1 chaperonin GroEL -
  J4854_RS01240 (J4854_01240) - 213118..213651 (-) 534 WP_200772878.1 hypothetical protein -
  J4854_RS01245 (J4854_01245) - 214140..214646 (+) 507 WP_234700105.1 hypothetical protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14771.80 Da        Isoelectric Point: 5.9328

>NTDB_id=552024 J4854_RS01225 WP_003004675.1 209552..209947(+) (ssbB/cilA) [Streptococcus lactarius strain CCUG 66490]
MYNKVILIGRLVAAPELHKTSTDKSVARVTVAVNRRYKDQNGERETDFVNVVVWGKLAETMASYASKGSLISLDGEIRTR
RYEKNGVMQYVTEVLCQSFQLLESRAQRAMRENGGTGDLADIILEEEDLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=552024 J4854_RS01225 WP_003004675.1 209552..209947(+) (ssbB/cilA) [Streptococcus lactarius strain CCUG 66490]
ATGTATAATAAAGTTATTTTAATCGGTCGCCTAGTAGCGGCTCCAGAATTGCATAAAACCAGCACAGATAAATCGGTTGC
TCGAGTGACCGTGGCGGTCAATCGCCGTTACAAGGATCAAAATGGAGAGCGGGAAACCGATTTTGTCAATGTCGTTGTTT
GGGGGAAATTGGCTGAAACCATGGCTAGTTATGCCAGTAAAGGCAGCTTGATCTCTTTGGATGGAGAGATCCGTACCCGT
CGCTATGAGAAAAATGGGGTTATGCAGTATGTGACAGAAGTCCTCTGTCAGAGCTTCCAGTTGCTTGAGAGCCGGGCTCA
AAGAGCGATGCGTGAAAATGGTGGGACAGGAGATCTTGCTGATATTATCTTAGAAGAGGAAGATTTACCTTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

78.626

100

0.786
  ssbB/cilA Streptococcus pneumoniae Rx1

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae D39

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae R6

77.863

100

0.779
  ssbB/cilA Streptococcus mitis NCTC 12261

77.863

100

0.779
  ssbB/cilA Streptococcus mitis SK321

77.863

100

0.779
  ssbA Streptococcus mutans UA159

75.573

100

0.756
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB Lactococcus lactis subsp. cremoris KW2

59.292

86.26

0.511
  ssb Latilactobacillus sakei subsp. sakei 23K

44.828

88.55

0.397
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.17

80.916

0.382
  ssbB Bacillus subtilis subsp. subtilis str. 168

46.296

82.443

0.382