Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   J5V76_RS10675 Genome accession   NZ_CP072065
Coordinates   2076489..2076821 (+) Length   110 a.a.
NCBI ID   WP_002085936.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN29/1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2071489..2081821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5V76_RS10650 (J5V76_10650) - 2071845..2072522 (-) 678 WP_002065129.1 hypothetical protein -
  J5V76_RS10655 (J5V76_10655) - 2072632..2073279 (+) 648 WP_215587721.1 HD domain-containing protein -
  J5V76_RS10660 (J5V76_10660) - 2073276..2075171 (+) 1896 WP_002127139.1 ABC-F family ATP-binding cassette domain-containing protein -
  J5V76_RS10665 (J5V76_10665) - 2075247..2075978 (+) 732 WP_002127140.1 Bax inhibitor-1/YccA family protein -
  J5V76_RS10670 (J5V76_10670) - 2076073..2076327 (+) 255 WP_002012563.1 DUF4318 domain-containing protein -
  J5V76_RS10675 (J5V76_10675) ssbA 2076489..2076821 (+) 333 WP_002085936.1 single-stranded DNA-binding protein Machinery gene
  J5V76_RS10680 (J5V76_10680) - 2076877..2077467 (-) 591 WP_002136037.1 TetR/AcrR family transcriptional regulator -
  J5V76_RS10685 (J5V76_10685) - 2077612..2078745 (-) 1134 WP_215587722.1 FAD-dependent monooxygenase -
  J5V76_RS10690 (J5V76_10690) - 2079003..2080130 (+) 1128 WP_193653531.1 conserved virulence factor C family protein -
  J5V76_RS10695 (J5V76_10695) - 2080134..2080517 (+) 384 WP_002085930.1 thiol-disulfide oxidoreductase DCC family protein -
  J5V76_RS10700 (J5V76_10700) - 2080600..2081034 (+) 435 WP_002012568.1 BrxA/BrxB family bacilliredoxin -

Sequence

Protein


Download         Length: 110 a.a.        Molecular weight: 12694.49 Da        Isoelectric Point: 9.1002

>NTDB_id=550385 J5V76_RS10675 WP_002085936.1 2076489..2076821(+) (ssbA) [Bacillus mycoides strain BPN29/1]
MMNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRRSAENVTEYCTKGSLVGITGRIHTS
NYDDEQGKRVYRTEVLIESITFLERRREGA

Nucleotide


Download         Length: 333 bp        

>NTDB_id=550385 J5V76_RS10675 WP_002085936.1 2076489..2076821(+) (ssbA) [Bacillus mycoides strain BPN29/1]
ATGATGAATCGGGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGTGTCGCTTATGC
ACGAATATGTGTTGCGGTGAATAGAGGTTTTCGAAATAGTTTAGGTGAACAGCAAGTAGATTTTATTAATTGTGTTGTAT
GGAGAAGGTCGGCTGAAAATGTAACAGAATATTGTACGAAAGGCTCACTTGTTGGGATTACAGGGCGTATTCATACGAGT
AATTACGATGATGAACAAGGAAAGAGAGTATATAGAACTGAAGTTCTGATTGAGAGTATTACATTTCTGGAGAGAAGGAG
GGAGGGTGCATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

96.364

0.564
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.351

100

0.518
  ssb Latilactobacillus sakei subsp. sakei 23K

52.83

96.364

0.509
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

100

0.436
  ssbB Lactococcus lactis subsp. cremoris KW2

44.762

95.455

0.427
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.727

100

0.427
  ssbA Streptococcus mutans UA159

41.818

100

0.418
  ssbB/cilA Streptococcus pneumoniae Rx1

41.818

100

0.418
  ssbB/cilA Streptococcus pneumoniae D39

41.818

100

0.418
  ssbB/cilA Streptococcus pneumoniae R6

41.818

100

0.418
  ssbB/cilA Streptococcus mitis SK321

41.818

100

0.418
  ssbB/cilA Streptococcus mitis NCTC 12261

40.909

100

0.409