Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   J5V73_RS10715 Genome accession   NZ_CP072057
Coordinates   2089416..2089754 (+) Length   112 a.a.
NCBI ID   WP_215577023.1    Uniprot ID   -
Organism   Bacillus mycoides strain JAS12/5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2084416..2094754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5V73_RS10690 (J5V73_10690) - 2084772..2085449 (-) 678 WP_002012555.1 hypothetical protein -
  J5V73_RS10695 (J5V73_10695) - 2085559..2086206 (+) 648 WP_002065130.1 HD domain-containing protein -
  J5V73_RS10700 (J5V73_10700) - 2086203..2088098 (+) 1896 WP_002127139.1 ABC-F family ATP-binding cassette domain-containing protein -
  J5V73_RS10705 (J5V73_10705) - 2088174..2088905 (+) 732 WP_002127140.1 Bax inhibitor-1/YccA family protein -
  J5V73_RS10710 (J5V73_10710) - 2089000..2089254 (+) 255 WP_002012563.1 DUF4318 domain-containing protein -
  J5V73_RS10715 (J5V73_10715) ssbA 2089416..2089754 (+) 339 WP_215577023.1 single-stranded DNA-binding protein Machinery gene
  J5V73_RS10720 (J5V73_10720) - 2089910..2091037 (+) 1128 WP_215577024.1 conserved virulence factor C family protein -
  J5V73_RS10725 (J5V73_10725) - 2091041..2091424 (+) 384 WP_002085930.1 thiol-disulfide oxidoreductase DCC family protein -
  J5V73_RS10730 (J5V73_10730) - 2091507..2091941 (+) 435 WP_002012568.1 BrxA/BrxB family bacilliredoxin -
  J5V73_RS10735 (J5V73_10735) - 2091991..2092767 (+) 777 WP_215577025.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12895.67 Da        Isoelectric Point: 9.1002

>NTDB_id=550283 J5V73_RS10715 WP_215577023.1 2089416..2089754(+) (ssbA) [Bacillus mycoides strain JAS12/5]
MMNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRRSAENVTEYCTKGSLVGITGRIHTS
NYDDEQGKRVYRTEVVIESITFLERRREGASQ

Nucleotide


Download         Length: 339 bp        

>NTDB_id=550283 J5V73_RS10715 WP_215577023.1 2089416..2089754(+) (ssbA) [Bacillus mycoides strain JAS12/5]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGTGTCGCTTATGC
ACGAATATGTGTTGCGGTGAATAGAGGTTTTCGAAATAGTTTAGGTGAACAGCAAGTAGATTTTATTAATTGTGTTGTAT
GGAGAAGGTCGGCTGAAAATGTAACAGAATATTGTACGAAAGGCTCACTTGTTGGGATTACAGGGCGTATTCATACGAGT
AATTACGATGATGAACAAGGAAAGAGAGTATATAGAACTGAAGTTGTGATTGAGAGCATTACATTTTTGGAGAGAAGGAG
GGAGGGGGCATCGCAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

94.643

0.554
  ssb Latilactobacillus sakei subsp. sakei 23K

51.261

100

0.545
  ssbB Bacillus subtilis subsp. subtilis str. 168

49.558

100

0.5
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.727

98.214

0.42
  ssbB Lactococcus lactis subsp. cremoris KW2

43.81

93.75

0.411
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.818

98.214

0.411
  ssbA Streptococcus mutans UA159

40.909

98.214

0.402
  ssbB/cilA Streptococcus pneumoniae Rx1

40.909

98.214

0.402
  ssbB/cilA Streptococcus pneumoniae D39

40.909

98.214

0.402
  ssbB/cilA Streptococcus pneumoniae R6

40.909

98.214

0.402
  ssbB/cilA Streptococcus mitis SK321

40.909

98.214

0.402
  ssbB/cilA Streptococcus mitis NCTC 12261

40

98.214

0.393