Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   J5W00_RS10765 Genome accession   NZ_CP072055
Coordinates   2096848..2097186 (+) Length   112 a.a.
NCBI ID   WP_002012564.1    Uniprot ID   J8I4L2
Organism   Bacillus mycoides strain JAS85/1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2091848..2102186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5W00_RS10740 (J5W00_10740) - 2092144..2092881 (-) 738 WP_059038030.1 hypothetical protein -
  J5W00_RS10745 (J5W00_10745) - 2092991..2093638 (+) 648 WP_002065130.1 HD domain-containing protein -
  J5W00_RS10750 (J5W00_10750) - 2093635..2095530 (+) 1896 WP_002127139.1 ABC-F family ATP-binding cassette domain-containing protein -
  J5W00_RS10755 (J5W00_10755) - 2095606..2096337 (+) 732 WP_016126856.1 Bax inhibitor-1/YccA family protein -
  J5W00_RS10760 (J5W00_10760) - 2096432..2096686 (+) 255 WP_002185977.1 DUF4318 domain-containing protein -
  J5W00_RS10765 (J5W00_10765) ssbA 2096848..2097186 (+) 339 WP_002012564.1 single-stranded DNA-binding protein Machinery gene
  J5W00_RS10770 (J5W00_10770) - 2097342..2098469 (+) 1128 WP_002012566.1 conserved virulence factor C family protein -
  J5W00_RS10775 (J5W00_10775) - 2098473..2098856 (+) 384 WP_002085930.1 thiol-disulfide oxidoreductase DCC family protein -
  J5W00_RS10780 (J5W00_10780) - 2098939..2099373 (+) 435 WP_002012568.1 BrxA/BrxB family bacilliredoxin -
  J5W00_RS10785 (J5W00_10785) - 2099423..2100199 (+) 777 WP_215561087.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12966.75 Da        Isoelectric Point: 9.1002

>NTDB_id=550233 J5W00_RS10765 WP_002012564.1 2096848..2097186(+) (ssbA) [Bacillus mycoides strain JAS85/1]
MMNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRRSAENVTEYCTKGSLVGITGRIHTS
NYDDEQGKRVYRTEVLIENITFLERRRESASQ

Nucleotide


Download         Length: 339 bp        

>NTDB_id=550233 J5W00_RS10765 WP_002012564.1 2096848..2097186(+) (ssbA) [Bacillus mycoides strain JAS85/1]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGTGTCGCTTATGC
ACGAATATGTGTTGCGGTGAATAGAGGTTTTCGAAATAGTTTAGGTGAGCAACAAGTAGATTTTATTAATTGTGTTGTAT
GGAGAAGGTCGGCTGAAAATGTAACAGAATATTGTACGAAAGGCTCACTTGTTGGGATTACAGGGCGTATTCATACGAGT
AATTACGATGATGAACAAGGAAAGAGAGTATATAGAACTGAAGTTCTGATTGAGAATATTACATTTTTAGAGAGAAGGCG
GGAGAGTGCATCGCAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8I4L2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

94.643

0.545
  ssb Latilactobacillus sakei subsp. sakei 23K

53.774

94.643

0.509
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.442

100

0.509
  ssbB Lactococcus lactis subsp. cremoris KW2

43.86

100

0.446
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.727

98.214

0.42
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.727

98.214

0.42
  ssbB/cilA Streptococcus pneumoniae D39

41.818

98.214

0.411
  ssbB/cilA Streptococcus pneumoniae Rx1

41.818

98.214

0.411
  ssbB/cilA Streptococcus pneumoniae R6

41.818

98.214

0.411
  ssbB/cilA Streptococcus mitis SK321

41.818

98.214

0.411
  ssbB/cilA Streptococcus mitis NCTC 12261

40.909

98.214

0.402
  ssbA Streptococcus mutans UA159

40.909

98.214

0.402