Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LSP16_RS04530 Genome accession   NZ_CP089067
Coordinates   937276..938364 (-) Length   362 a.a.
NCBI ID   WP_014602326.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain UNC_PaerCF19     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 932276..943364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP16_RS04505 (LSP16_04470) - 932604..933590 (-) 987 WP_003111200.1 phospholipase C -
  LSP16_RS04510 (LSP16_04475) aroE 933701..934525 (-) 825 WP_003111201.1 shikimate dehydrogenase -
  LSP16_RS04515 (LSP16_04480) hemF 934583..935500 (-) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  LSP16_RS04520 (LSP16_04485) - 935691..936668 (+) 978 WP_003097303.1 NADPH:quinone reductase -
  LSP16_RS04525 (LSP16_04490) - 936678..937235 (-) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  LSP16_RS04530 (LSP16_04495) dprA 937276..938364 (-) 1089 WP_014602326.1 DNA-processing protein DprA Machinery gene
  LSP16_RS04535 (LSP16_04500) tsaP 938499..939524 (-) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  LSP16_RS04540 (LSP16_04505) def 939663..940169 (+) 507 WP_003107059.1 peptide deformylase -
  LSP16_RS04545 (LSP16_04510) fmt 940224..941168 (+) 945 WP_010793609.1 methionyl-tRNA formyltransferase -
  LSP16_RS04550 (LSP16_04515) rsmB 941165..942469 (+) 1305 WP_219832778.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 37701.23 Da        Isoelectric Point: 7.0742

>NTDB_id=548624 LSP16_RS04530 WP_014602326.1 937276..938364(-) (dprA) [Pseudomonas aeruginosa strain UNC_PaerCF19]
MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPAGAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGPR
RHLLMWDDPGYPALLAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA
AHEGALEVGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPAQPLPHPLLALLRAAP
YTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=548624 LSP16_RS04530 WP_014602326.1 937276..938364(-) (dprA) [Pseudomonas aeruginosa strain UNC_PaerCF19]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGCCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT
GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCGGCGCCTGGCGCACCCTGGGAGTGCCTG
CCGAGGCCGCCGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC
AGGCACCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT
CGAAGGCGCTCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCA
CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGCATCGATGGCGCC
GCCCACGAGGGCGCGCTGGAGGTTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGCCG
CCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAGCTGCCGCTGGACAGCCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGGCGCGAGGTGTACGCCATTCCGGGTTCCATCCACCATCCTGG
CGCACGTGGCTGCCACCAACTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGCGCAACCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCC
TACACCAGCGAAGGCCTGGCCGCCGCCAGCGGCATGACGCTGCCCGACGTGCTGGCGACGCTCAGCGAACTGGAACTCGA
CGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)

DprA winged helix domain (WHD_DprA)

(297-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

42.781

100

0.442
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

42.781

100

0.442
  dprA Vibrio campbellii strain DS40M4

43.243

100

0.442
  dprA Legionella pneumophila strain ERS1305867

43.38

98.066

0.425
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.972

98.066

0.412
  dprA Acinetobacter baumannii D1279779

37.569

100

0.376
  dprA Acinetobacter baumannii strain A118

38.177

96.961

0.37
  dprA Glaesserella parasuis strain SC1401

46.853

79.006

0.37
  dprA Neisseria gonorrhoeae strain FA1090

44.224

83.702

0.37
  dprA Neisseria gonorrhoeae MS11

43.894

83.702

0.367
  dprA Neisseria meningitidis MC58

45.704

80.387

0.367
  dprA Neisseria meningitidis strain C311

45.704

80.387

0.367