Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   JN057_RS07605 Genome accession   NZ_CP071871
Coordinates   1483436..1484668 (-) Length   410 a.a.
NCBI ID   WP_061632356.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain BVJ1JL     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1478436..1489668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN057_RS07575 (JN057_01563) - 1478623..1479591 (+) 969 WP_000081003.1 NAD(P)/FAD-dependent oxidoreductase -
  JN057_RS07580 (JN057_01564) whiA 1479625..1480536 (-) 912 WP_000011310.1 DNA-binding protein WhiA -
  JN057_RS07585 (JN057_01565) - 1480533..1481510 (-) 978 WP_001231086.1 YvcK family protein -
  JN057_RS07590 (JN057_01566) rapZ 1481507..1482397 (-) 891 WP_000163033.1 RNase adapter RapZ -
  JN057_RS07595 (JN057_01567) - 1482449..1482829 (-) 381 WP_001140412.1 RidA family protein -
  JN057_RS07600 (JN057_01568) yihA 1482840..1483427 (-) 588 WP_000422599.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  JN057_RS07605 (JN057_01569) clpX 1483436..1484668 (-) 1233 WP_061632356.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  JN057_RS07610 (JN057_01570) - 1484705..1484875 (-) 171 WP_000442261.1 hypothetical protein -
  JN057_RS07615 (JN057_01571) - 1484875..1485381 (-) 507 WP_061632355.1 dihydrofolate reductase -
  JN057_RS07620 (JN057_01572) - 1485511..1486029 (-) 519 WP_000229874.1 Dps family protein -
  JN057_RS07625 (JN057_01573) lytC 1486525..1488030 (-) 1506 WP_078140653.1 choline binding-anchored murein hydrolase LytC -
  JN057_RS07630 (JN057_01574) tpiA 1488068..1488826 (-) 759 WP_000087897.1 triose-phosphate isomerase -
  JN057_RS07635 (JN057_01575) - 1488924..1489601 (-) 678 WP_208093478.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45781.32 Da        Isoelectric Point: 4.4240

>NTDB_id=548625 JN057_RS07605 WP_061632356.1 1483436..1484668(-) (clpX) [Streptococcus pneumoniae strain BVJ1JL]
MPTTRNNDMMVYCSFCGKSQEEVQKIIAGNNAFICNECVELAQEIIREELVEEVLADLSEVPKPIELLHILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQVADFNIERAERGIIYVDEIDKIAKKNENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKETVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=548625 JN057_RS07605 WP_061632356.1 1483436..1484668(-) (clpX) [Streptococcus pneumoniae strain BVJ1JL]
ATGCCTACAACTAGGAATAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAGCCAAGAAGAAGTACAAAAAATAAT
CGCAGGTAACAACGCATTTATCTGTAATGAATGCGTGGAGTTAGCCCAGGAAATCATTCGAGAAGAATTGGTTGAGGAAG
TCTTGGCAGACTTGTCAGAAGTTCCAAAACCAATTGAACTCCTCCATATCTTGAACCACTATGTTATCGGTCAAGATCGT
GCCAAGCGTGCCTTGGCAGTGGCGGTTTATAATCACTACAAACGCATCAATTTCCACGATACGCGTGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAACATCTTGATGATTGGTCCAACTGGTTCAGGGAAAACATTCCTTGCCCAGACCTTGGCTA
AGAGCTTGAATGTGCCTTTTGCGATTGCGGATGCGACAGCTCTGACGGAGGCTGGTTATGTGGGTGAGGATGTGGAAAAT
ATACTCCTCAAACTCTTGCAGGTTGCTGACTTTAACATCGAACGTGCAGAGCGTGGCATTATCTATGTGGATGAAATTGA
CAAGATTGCCAAGAAGAATGAGAATGTGTCTATCACACGTGATGTTTCTGGTGAAGGGGTGCAACAAGCCCTTCTCAAGA
TTATCGAGGGAACTGTTGCTAGCGTACCGCCTCAAGGTGGACGCAAACATCCACAACAAGAGATGATTCAAGTGGATACA
AAAAATATCCTCTTCATCGTGGGTGGTGCTTTTGATGGTATTGAAGAAATTGTCAAACAACGTCTGGGTGAAAAAGTCAT
CGGATTTGGTCAAAACAATAAGGCGATTGACGAAAACAGCTCATACATGCAAGAAATCATCGCTGAAGACATTCAAAAAT
TTGGTATTATCCCTGAGTTGATTGGACGCTTGCCTGTTTTTGCGGCTCTTGAGCAATTGACCGTTGATGACTTGGTTCGC
ATCTTGAAAGAGCCAAGAAATGCCTTGGTGAAACAATACCAAACCTTGCTTTCTTATGATGATGTTGAGTTGGAATTTGA
CGACGAAGCCCTTCAAGAGATTGCTAATAAAGCAATCGAACGGAAGACAGGGGCGCGTGGACTTCGCTCCATCATCGAAG
AAACCATGCTAGATGTTATGTTTGAGGTGCCGAGTCAGGAAAATGTGAAATTGGTTCGCATCACTAAAGAAACTGTCGAT
GGAACGGATAAACCGATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.098

100

0.861
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.965

98.049

0.559