Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   LSP16_RS04535 Genome accession   NZ_CP089067
Coordinates   938499..939524 (-) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain UNC_PaerCF19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 933499..944524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSP16_RS04510 (LSP16_04475) aroE 933701..934525 (-) 825 WP_003111201.1 shikimate dehydrogenase -
  LSP16_RS04515 (LSP16_04480) hemF 934583..935500 (-) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  LSP16_RS04520 (LSP16_04485) - 935691..936668 (+) 978 WP_003097303.1 NADPH:quinone reductase -
  LSP16_RS04525 (LSP16_04490) - 936678..937235 (-) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  LSP16_RS04530 (LSP16_04495) dprA 937276..938364 (-) 1089 WP_014602326.1 DNA-processing protein DprA Machinery gene
  LSP16_RS04535 (LSP16_04500) tsaP 938499..939524 (-) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  LSP16_RS04540 (LSP16_04505) def 939663..940169 (+) 507 WP_003107059.1 peptide deformylase -
  LSP16_RS04545 (LSP16_04510) fmt 940224..941168 (+) 945 WP_010793609.1 methionyl-tRNA formyltransferase -
  LSP16_RS04550 (LSP16_04515) rsmB 941165..942469 (+) 1305 WP_219832778.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  LSP16_RS04555 (LSP16_04520) trkA 942496..943869 (+) 1374 WP_003111375.1 Trk system potassium transporter TrkA -
  LSP16_RS04560 (LSP16_04525) - 944017..944334 (+) 318 WP_003097288.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=548625 LSP16_RS04535 WP_003097294.1 938499..939524(-) (tsaP) [Pseudomonas aeruginosa strain UNC_PaerCF19]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=548625 LSP16_RS04535 WP_003097294.1 938499..939524(-) (tsaP) [Pseudomonas aeruginosa strain UNC_PaerCF19]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACACTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTATGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393