Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EXW36_RS10560 Genome accession   NZ_CP071811
Coordinates   2054610..2054918 (+) Length   102 a.a.
NCBI ID   WP_215567862.1    Uniprot ID   -
Organism   Bacillus mycoides strain JAS15/1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2049610..2059918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW36_RS10555 (EXW36_10555) - 2052651..2054066 (+) 1416 WP_215567859.1 protein kinase -
  EXW36_RS10560 (EXW36_10560) ssbA 2054610..2054918 (+) 309 WP_215567862.1 single-stranded DNA-binding protein Machinery gene
  EXW36_RS10565 (EXW36_10565) - 2055074..2056201 (+) 1128 WP_002012566.1 conserved virulence factor C family protein -
  EXW36_RS10570 (EXW36_10570) - 2056205..2056588 (+) 384 WP_002085930.1 DUF393 domain-containing protein -
  EXW36_RS10575 (EXW36_10575) - 2056671..2057105 (+) 435 WP_002012568.1 BrxA/BrxB family bacilliredoxin -
  EXW36_RS10580 (EXW36_10580) - 2057155..2057931 (+) 777 WP_002127165.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11814.28 Da        Isoelectric Point: 8.2471

>NTDB_id=548061 EXW36_RS10560 WP_215567862.1 2054610..2054918(+) (ssbA) [Bacillus mycoides strain JAS15/1]
MTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRRSAENVTEYCTKGSLVGITGRIHTSNYDDEQGKRV
YRTEVLIENITFLERRRESASQ

Nucleotide


Download         Length: 309 bp        

>NTDB_id=548061 EXW36_RS10560 WP_215567862.1 2054610..2054918(+) (ssbA) [Bacillus mycoides strain JAS15/1]
TTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGTGTCGCTTATGCACGAATATGTGTTGCGGTGAATAGAGGTTT
TCGAAATAGTTTAGGTGAGCAACAAGTAGATTTTATTAATTGTGTTGTATGGAGAAGGTCGGCTGAAAATGTAACAGAAT
ATTGTACGAAAGGCTCACTTGTTGGGATTACAGGGCGTATTCATACGAGTAATTACGATGATGAACAAGGAAAGAGAGTA
TATAGAACTGAAGTTCTGATTGAGAATATTACATTTTTAGAGAGAAGGCGGGAGAGTGCATCGCAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.167

94.118

0.51
  ssbB Bacillus subtilis subsp. subtilis str. 168

48.544

100

0.49
  ssb Latilactobacillus sakei subsp. sakei 23K

50

94.118

0.471
  ssbB Lactococcus lactis subsp. cremoris KW2

40.952

100

0.422
  ssbB/cilA Streptococcus pneumoniae R6

39

98.039

0.382
  ssbB/cilA Streptococcus pneumoniae Rx1

39

98.039

0.382
  ssbB/cilA Streptococcus pneumoniae D39

39

98.039

0.382
  ssbB/cilA Streptococcus pneumoniae TIGR4

39

98.039

0.382
  ssbB Streptococcus sobrinus strain NIDR 6715-7

39

98.039

0.382
  ssbB/cilA Streptococcus mitis SK321

38

98.039

0.373
  ssbB/cilA Streptococcus mitis NCTC 12261

38

98.039

0.373
  ssbA Streptococcus mutans UA159

38.542

94.118

0.363