Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EXW53_RS10720 Genome accession   NZ_CP071808
Coordinates   2076132..2076470 (+) Length   112 a.a.
NCBI ID   WP_002171706.1    Uniprot ID   -
Organism   Bacillus mycoides strain JAS014     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2063849..2076470 2076132..2076470 within 0


Gene organization within MGE regions


Location: 2063849..2076470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW53_RS10645 (EXW53_10665) - 2063849..2064035 (-) 187 Protein_2022 site-specific integrase -
  EXW53_RS10650 (EXW53_10670) - 2064030..2064566 (+) 537 Protein_2023 DnaB-like helicase C-terminal domain-containing protein -
  EXW53_RS10655 (EXW53_10675) - 2065508..2065786 (-) 279 WP_199661422.1 hypothetical protein -
  EXW53_RS10665 (EXW53_10685) - 2067219..2067821 (+) 603 Protein_2025 hypothetical protein -
  EXW53_RS10670 (EXW53_10690) - 2068025..2068495 (+) 471 WP_199661425.1 ArpU family phage packaging/lysis transcriptional regulator -
  EXW53_RS10675 (EXW53_10695) - 2068492..2069034 (+) 543 WP_199661426.1 site-specific integrase -
  EXW53_RS10680 (EXW53_10700) - 2069283..2069711 (+) 429 WP_215558398.1 hypothetical protein -
  EXW53_RS10685 (EXW53_10705) - 2070024..2070329 (-) 306 WP_131231123.1 WGxxGxxG family protein -
  EXW53_RS10690 (EXW53_10710) - 2070675..2071190 (+) 516 WP_000512143.1 DUF3231 family protein -
  EXW53_RS10695 (EXW53_10715) - 2071411..2072163 (-) 753 WP_199661920.1 hypothetical protein -
  EXW53_RS10700 (EXW53_10720) - 2072273..2072920 (+) 648 WP_002202190.1 HD domain-containing protein -
  EXW53_RS10705 (EXW53_10725) - 2072917..2074812 (+) 1896 WP_002158067.1 ABC-F family ATP-binding cassette domain-containing protein -
  EXW53_RS10710 (EXW53_10730) - 2074889..2075620 (+) 732 WP_215558399.1 Bax inhibitor-1/YccA family protein -
  EXW53_RS10715 (EXW53_10735) - 2075717..2075970 (+) 254 Protein_2035 DUF4318 domain-containing protein -
  EXW53_RS10720 (EXW53_10740) ssb 2076132..2076470 (+) 339 WP_002171706.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12881.69 Da        Isoelectric Point: 9.0926

>NTDB_id=548011 EXW53_RS10720 WP_002171706.1 2076132..2076470(+) (ssb) [Bacillus mycoides strain JAS014]
MMNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCTKGSLVGITGRIHTS
NYDDEQGKRIYRTEVVIESITFLERRREGASQ

Nucleotide


Download         Length: 339 bp        

>NTDB_id=548011 EXW53_RS10720 WP_002171706.1 2076132..2076470(+) (ssb) [Bacillus mycoides strain JAS014]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGAGTCGCTTATGC
ACGAATATGTGTTGCGGTGAATAGAGGTTTTCGAAATAGTTTAGGTGAACAACAAGTCGATTTTATAAATTGTGTTGTAT
GGCGAAAATCGGCTGAAAATGTAACAGAATATTGTACGAAGGGCTCACTTGTTGGGATTACCGGGCGTATTCATACGAGT
AATTACGATGATGAACAAGGAAAGAGAATATATAGAACTGAAGTTGTAATTGAGAGCATTACATTTTTGGAGAGAAGGCG
GGAGGGTGCATCGCAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

51.261

100

0.545
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.604

94.643

0.536
  ssbB Bacillus subtilis subsp. subtilis str. 168

49.558

100

0.5
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

98.214

0.429
  ssbB Lactococcus lactis subsp. cremoris KW2

44.762

93.75

0.42
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.909

98.214

0.402
  ssbB/cilA Streptococcus mitis NCTC 12261

40.909

98.214

0.402
  ssbB/cilA Streptococcus pneumoniae Rx1

40

98.214

0.393
  ssbB/cilA Streptococcus pneumoniae D39

40

98.214

0.393
  ssbB/cilA Streptococcus pneumoniae R6

40

98.214

0.393
  ssbB/cilA Streptococcus mitis SK321

40

98.214

0.393
  ssbA Streptococcus mutans UA159

40

98.214

0.393