Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   J1899_RS20785 Genome accession   NZ_CP071709
Coordinates   4220985..4221341 (-) Length   118 a.a.
NCBI ID   WP_214476466.1    Uniprot ID   -
Organism   Cytobacillus gottheilii strain 1839     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4215985..4226341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1899_RS20770 (J1899_20775) - 4217242..4220058 (+) 2817 WP_214478958.1 DEAD/DEAH box helicase -
  J1899_RS20775 (J1899_20780) - 4220118..4220471 (-) 354 WP_214476464.1 hypothetical protein -
  J1899_RS20780 (J1899_20785) - 4220749..4220979 (-) 231 WP_214476465.1 hypothetical protein -
  J1899_RS20785 (J1899_20790) ssbB 4220985..4221341 (-) 357 WP_214476466.1 single-stranded DNA-binding protein Machinery gene
  J1899_RS20790 (J1899_20795) - 4221609..4222028 (+) 420 WP_066442376.1 YwpF-like family protein -
  J1899_RS20795 (J1899_20800) - 4222157..4222537 (-) 381 WP_066442375.1 hypothetical protein -
  J1899_RS20800 (J1899_20805) - 4222839..4223165 (-) 327 WP_214476467.1 hypothetical protein -
  J1899_RS20805 (J1899_20810) fabZ 4223615..4224037 (-) 423 WP_151573832.1 3-hydroxyacyl-ACP dehydratase FabZ -
  J1899_RS20810 (J1899_20815) - 4224397..4224669 (-) 273 WP_214476468.1 DNA-directed RNA polymerase subunit beta -
  J1899_RS20815 (J1899_20820) - 4224683..4225531 (-) 849 WP_214476469.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 13501.32 Da        Isoelectric Point: 9.4666

>NTDB_id=547222 J1899_RS20785 WP_214476466.1 4220985..4221341(-) (ssbB) [Cytobacillus gottheilii strain 1839]
MINQVTLVGRLTKDPELKRTQDGKPVTNVVLAVNRQYKNQQGEIDADFVQCTLWKKTAENTASYCQKGSLIGITGRIQTR
HYENNEQKRVYVTEVVAESVRFLDKRKESVEVPAGREF

Nucleotide


Download         Length: 357 bp        

>NTDB_id=547222 J1899_RS20785 WP_214476466.1 4220985..4221341(-) (ssbB) [Cytobacillus gottheilii strain 1839]
ATGATTAATCAAGTCACCCTCGTCGGGCGTCTTACAAAGGATCCTGAGCTGAAGAGAACACAGGATGGCAAGCCGGTCAC
AAATGTGGTGCTGGCCGTCAATCGTCAATACAAAAACCAGCAGGGAGAAATTGACGCTGATTTTGTTCAATGCACACTAT
GGAAGAAAACGGCTGAGAACACAGCGTCCTATTGCCAAAAAGGCTCACTGATTGGCATTACAGGCAGAATCCAAACGAGG
CACTATGAAAACAATGAACAAAAACGAGTTTATGTAACCGAGGTTGTTGCAGAGAGCGTCCGTTTCCTTGATAAACGGAA
AGAATCAGTTGAAGTACCAGCAGGAAGGGAGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

66.981

89.831

0.602
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.075

90.678

0.508
  ssb Latilactobacillus sakei subsp. sakei 23K

51.887

89.831

0.466
  ssbB Streptococcus sobrinus strain NIDR 6715-7

49.074

91.525

0.449
  ssbB/cilA Streptococcus mitis NCTC 12261

48.148

91.525

0.441
  ssbB/cilA Streptococcus pneumoniae TIGR4

48.148

91.525

0.441
  ssbA Streptococcus mutans UA159

47.222

91.525

0.432
  ssbB/cilA Streptococcus pneumoniae Rx1

47.222

91.525

0.432
  ssbB/cilA Streptococcus pneumoniae D39

47.222

91.525

0.432
  ssbB/cilA Streptococcus pneumoniae R6

47.222

91.525

0.432
  ssbB/cilA Streptococcus mitis SK321

47.222

91.525

0.432
  ssbB Lactococcus lactis subsp. cremoris KW2

43.81

88.983

0.39