Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   LQT99_RS06200 Genome accession   NZ_CP088005
Coordinates   1192121..1192792 (+) Length   223 a.a.
NCBI ID   WP_032874550.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain bm     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1187121..1197792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQT99_RS06185 (LQT99_06180) - 1187927..1188925 (+) 999 WP_007407297.1 LacI family DNA-binding transcriptional regulator -
  LQT99_RS06190 (LQT99_06185) - 1189001..1190446 (+) 1446 WP_032874548.1 tagaturonate reductase -
  LQT99_RS06195 (LQT99_06190) - 1190443..1191936 (+) 1494 WP_021494038.1 altronate dehydratase family protein -
  LQT99_RS06200 (LQT99_06195) scnR 1192121..1192792 (+) 672 WP_032874550.1 response regulator transcription factor Regulator
  LQT99_RS06205 (LQT99_06200) - 1192789..1194147 (+) 1359 WP_032874552.1 HAMP domain-containing sensor histidine kinase -
  LQT99_RS06210 (LQT99_06205) - 1194267..1195202 (+) 936 WP_065465011.1 ATP-binding cassette domain-containing protein -
  LQT99_RS06215 (LQT99_06210) - 1195183..1195914 (+) 732 WP_032874554.1 ABC transporter permease -
  LQT99_RS06220 (LQT99_06215) - 1195932..1196123 (+) 192 WP_003154894.1 hypothetical protein -
  LQT99_RS06225 (LQT99_06220) - 1196189..1197439 (+) 1251 WP_032874556.1 ATP-binding protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 26378.67 Da        Isoelectric Point: 6.6664

>NTDB_id=547111 LQT99_RS06200 WP_032874550.1 1192121..1192792(+) (scnR) [Bacillus amyloliquefaciens strain bm]
MNNILYIEDDQEIGQFVKGDLEDRGYMIIWLTSSYNYETYIEKADLIVLDIMMPGLDGFTIGQRMKKTHPQIPLLLLTAR
TGLEDKLKGLGFADDYVTKPFHPDELAARIEVLLRRFDKTAIHELKLKHLSVHLKEKRILNHQTHEEIFLTDKQLRIFLL
LLRHPNQILTKEQIYENIWEQPYIEGDKTLMVHIRHLRQKIEINPNEPEILETIRGIGYRIKQ

Nucleotide


Download         Length: 672 bp        

>NTDB_id=547111 LQT99_RS06200 WP_032874550.1 1192121..1192792(+) (scnR) [Bacillus amyloliquefaciens strain bm]
ATGAATAACATTTTATACATTGAAGATGACCAAGAAATTGGCCAATTTGTAAAGGGTGATTTAGAAGATCGGGGCTATAT
GATTATATGGCTCACTTCTTCCTATAATTACGAAACATATATAGAAAAGGCTGATCTGATCGTGCTTGATATAATGATGC
CCGGTTTAGACGGATTTACAATCGGTCAAAGGATGAAAAAAACACATCCGCAGATCCCGCTCTTGCTTTTAACAGCCAGA
ACGGGTCTGGAAGATAAGCTGAAAGGCTTAGGATTTGCGGATGATTACGTGACAAAGCCCTTTCATCCCGATGAACTGGC
TGCTCGAATCGAAGTATTATTAAGAAGATTTGACAAGACTGCCATTCATGAATTGAAGCTAAAACACTTAAGTGTTCACT
TGAAAGAAAAAAGAATTTTAAATCATCAAACTCATGAGGAAATATTTTTAACTGATAAGCAGTTAAGGATTTTTTTGCTT
TTACTTAGACATCCCAATCAAATATTAACAAAGGAACAAATTTATGAAAATATTTGGGAACAGCCCTATATCGAAGGGGA
TAAGACGTTGATGGTACATATCCGGCATTTACGGCAAAAAATCGAGATTAATCCAAATGAGCCGGAAATTCTAGAAACAA
TCAGAGGGATTGGATACAGGATCAAACAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-221)

Response regulator receiver domain (Response_reg)

(4-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

36

100

0.363