Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | FH974_RS01925 | Genome accession | NZ_CP071325 |
| Coordinates | 393047..393469 (-) | Length | 140 a.a. |
| NCBI ID | WP_047886941.1 | Uniprot ID | - |
| Organism | Photobacterium ganghwense strain C2.2 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 388047..398469
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FH974_RS01905 (FH974_01905) | coaE | 388298..388912 (-) | 615 | WP_047886945.1 | dephospho-CoA kinase | - |
| FH974_RS01910 (FH974_01910) | pilD | 388917..389786 (-) | 870 | WP_047886944.1 | A24 family peptidase | Machinery gene |
| FH974_RS01915 (FH974_01915) | pilC | 390062..391282 (-) | 1221 | WP_047886943.1 | type II secretion system F family protein | Machinery gene |
| FH974_RS01920 (FH974_01920) | pilB | 391338..393038 (-) | 1701 | WP_047886942.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| FH974_RS01925 (FH974_01925) | pilA | 393047..393469 (-) | 423 | WP_047886941.1 | pilin | Machinery gene |
| FH974_RS01930 (FH974_01930) | nadC | 393940..394827 (-) | 888 | WP_047887027.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| FH974_RS01935 (FH974_01935) | ampD | 395127..395690 (+) | 564 | WP_047886939.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| FH974_RS01940 (FH974_01940) | pdhR | 395987..396760 (+) | 774 | WP_047886938.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 140 a.a. Molecular weight: 14956.90 Da Isoelectric Point: 4.5880
>NTDB_id=545049 FH974_RS01925 WP_047886941.1 393047..393469(-) (pilA) [Photobacterium ganghwense strain C2.2]
MKKQNGFTLIELMIVVAIIGVLSAIAVPAYQDYVKRSEGASALATLKSLITPSELWYQENGDYLKSEQANIFTALGISAK
SNSLGDISIPSDNSLDFTFSGNSSLPNTTKITFTRSATGWGCEVNNADIETDSCPAAKKP
MKKQNGFTLIELMIVVAIIGVLSAIAVPAYQDYVKRSEGASALATLKSLITPSELWYQENGDYLKSEQANIFTALGISAK
SNSLGDISIPSDNSLDFTFSGNSSLPNTTKITFTRSATGWGCEVNNADIETDSCPAAKKP
Nucleotide
Download Length: 423 bp
>NTDB_id=545049 FH974_RS01925 WP_047886941.1 393047..393469(-) (pilA) [Photobacterium ganghwense strain C2.2]
ATGAAAAAACAAAACGGCTTTACGCTGATTGAACTGATGATTGTGGTGGCGATTATCGGTGTATTATCAGCAATAGCAGT
ACCTGCTTATCAAGACTATGTTAAACGAAGTGAAGGTGCTTCAGCTCTTGCAACATTAAAATCACTTATCACGCCATCAG
AACTTTGGTACCAGGAAAATGGTGACTACCTAAAATCAGAACAAGCAAATATTTTTACGGCACTTGGAATCTCCGCAAAA
TCAAATAGCCTAGGCGATATTTCTATTCCTTCAGACAATTCACTTGATTTTACTTTTTCAGGCAATTCTTCACTCCCAAA
TACAACGAAGATAACATTTACCCGTTCAGCTACAGGCTGGGGTTGTGAAGTTAACAATGCAGACATTGAAACAGATAGCT
GCCCAGCAGCTAAGAAACCGTAG
ATGAAAAAACAAAACGGCTTTACGCTGATTGAACTGATGATTGTGGTGGCGATTATCGGTGTATTATCAGCAATAGCAGT
ACCTGCTTATCAAGACTATGTTAAACGAAGTGAAGGTGCTTCAGCTCTTGCAACATTAAAATCACTTATCACGCCATCAG
AACTTTGGTACCAGGAAAATGGTGACTACCTAAAATCAGAACAAGCAAATATTTTTACGGCACTTGGAATCTCCGCAAAA
TCAAATAGCCTAGGCGATATTTCTATTCCTTCAGACAATTCACTTGATTTTACTTTTTCAGGCAATTCTTCACTCCCAAA
TACAACGAAGATAACATTTACCCGTTCAGCTACAGGCTGGGGTTGTGAAGTTAACAATGCAGACATTGAAACAGATAGCT
GCCCAGCAGCTAAGAAACCGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
52.555 |
97.857 |
0.514 |
| pilA | Pseudomonas aeruginosa PAK |
46.429 |
100 |
0.464 |
| pilA | Vibrio cholerae strain A1552 |
36.913 |
100 |
0.393 |
| pilA | Vibrio cholerae C6706 |
36.913 |
100 |
0.393 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
36.913 |
100 |
0.393 |
| pilA/pilA1 | Eikenella corrodens VA1 |
34.932 |
100 |
0.364 |
| pilA | Acinetobacter baumannii strain A118 |
36.957 |
98.571 |
0.364 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
41.129 |
88.571 |
0.364 |