Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   FH974_RS01910 Genome accession   NZ_CP071325
Coordinates   388917..389786 (-) Length   289 a.a.
NCBI ID   WP_047886944.1    Uniprot ID   A0A0J1H3I1
Organism   Photobacterium ganghwense strain C2.2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 383917..394786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FH974_RS01885 (FH974_01885) secA 383987..386704 (+) 2718 WP_047886948.1 preprotein translocase subunit SecA -
  FH974_RS01890 (FH974_01890) mutT 386817..387215 (+) 399 WP_047886947.1 8-oxo-dGTP diphosphatase MutT -
  FH974_RS01895 (FH974_01895) yacG 387309..387527 (-) 219 WP_047887028.1 DNA gyrase inhibitor YacG -
  FH974_RS01900 (FH974_01900) zapD 387536..388273 (-) 738 WP_047886946.1 cell division protein ZapD -
  FH974_RS01905 (FH974_01905) coaE 388298..388912 (-) 615 WP_047886945.1 dephospho-CoA kinase -
  FH974_RS01910 (FH974_01910) pilD 388917..389786 (-) 870 WP_047886944.1 A24 family peptidase Machinery gene
  FH974_RS01915 (FH974_01915) pilC 390062..391282 (-) 1221 WP_047886943.1 type II secretion system F family protein Machinery gene
  FH974_RS01920 (FH974_01920) pilB 391338..393038 (-) 1701 WP_047886942.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FH974_RS01925 (FH974_01925) pilA 393047..393469 (-) 423 WP_047886941.1 pilin Machinery gene

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 32325.67 Da        Isoelectric Point: 6.6766

>NTDB_id=545046 FH974_RS01910 WP_047886944.1 388917..389786(-) (pilD) [Photobacterium ganghwense strain C2.2]
MELLILYPWLFPVFAAVFGLLVGSFLNVVIYRLPIMMERQWKADCAECFPEFGSVQETGPFNLSIPRSRCPHCQHPISMW
ENIPVVSWLLLKGRCKNCQAKISIRYPLVELFTAAIATTVALTLPHSEWALAVIFFSFALIVLTFIDIDKMLLPDQITLP
LMWAGLLMALLGFSPVSLTDAVIGAMAGYLSLWSLYWTFKLLTGKEGMGYGDFKLLAALGAWLGWQLLPFVVLLSSLVGA
ICGIILMRVQRSDSQTPFSFGPYLAIAGWIAILWGEPLLNWYLTSYLGM

Nucleotide


Download         Length: 870 bp        

>NTDB_id=545046 FH974_RS01910 WP_047886944.1 388917..389786(-) (pilD) [Photobacterium ganghwense strain C2.2]
ATGGAACTGCTGATCCTCTATCCCTGGCTTTTTCCTGTTTTTGCGGCTGTTTTTGGACTGCTTGTCGGCAGTTTCCTGAA
TGTCGTCATTTATCGCCTACCTATCATGATGGAGCGGCAGTGGAAAGCCGACTGCGCCGAGTGTTTTCCGGAATTTGGTT
CTGTTCAAGAAACCGGCCCATTCAACCTCAGCATTCCCCGCTCGCGCTGTCCACATTGCCAGCATCCCATCAGCATGTGG
GAAAATATCCCGGTTGTCAGCTGGCTGCTGCTAAAGGGGCGCTGCAAGAATTGCCAGGCAAAAATCAGCATCCGTTACCC
GCTGGTCGAGCTGTTTACTGCCGCCATTGCTACGACAGTGGCGCTGACGCTACCGCACTCTGAATGGGCGCTTGCCGTTA
TCTTTTTCAGCTTTGCATTGATTGTCCTGACGTTTATCGACATTGACAAAATGCTGCTACCGGATCAAATTACGCTGCCG
TTGATGTGGGCTGGCTTGCTGATGGCGCTGCTTGGCTTTTCGCCAGTCAGCCTGACCGATGCCGTCATCGGTGCCATGGC
GGGCTACCTGTCGCTGTGGAGCCTGTACTGGACGTTTAAGCTGCTGACCGGCAAAGAAGGAATGGGCTACGGGGATTTTA
AACTTCTCGCCGCACTGGGAGCCTGGCTTGGCTGGCAACTGCTGCCTTTTGTCGTGCTGCTTTCTTCTTTGGTTGGGGCA
ATCTGCGGCATCATTCTGATGCGGGTGCAGCGTTCCGACAGCCAAACACCGTTTTCATTTGGCCCCTATCTGGCGATTGC
CGGCTGGATAGCCATCTTGTGGGGTGAGCCACTGCTCAACTGGTACCTGACTTCATATCTGGGAATGTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-122)

Type IV leader peptidase family (Peptidase_A24)

(135-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J1H3I1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

64.236

99.654

0.64
  pilD Vibrio campbellii strain DS40M4

61.246

100

0.612
  pilD Neisseria gonorrhoeae MS11

50.35

98.962

0.498
  pilD Acinetobacter baumannii D1279779

49.446

93.772

0.464
  pilD Acinetobacter nosocomialis M2

49.077

93.772

0.46