Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FH974_RS01915 Genome accession   NZ_CP071325
Coordinates   390062..391282 (-) Length   406 a.a.
NCBI ID   WP_047886943.1    Uniprot ID   A0A0J1JVL2
Organism   Photobacterium ganghwense strain C2.2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 385062..396282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FH974_RS01890 (FH974_01890) mutT 386817..387215 (+) 399 WP_047886947.1 8-oxo-dGTP diphosphatase MutT -
  FH974_RS01895 (FH974_01895) yacG 387309..387527 (-) 219 WP_047887028.1 DNA gyrase inhibitor YacG -
  FH974_RS01900 (FH974_01900) zapD 387536..388273 (-) 738 WP_047886946.1 cell division protein ZapD -
  FH974_RS01905 (FH974_01905) coaE 388298..388912 (-) 615 WP_047886945.1 dephospho-CoA kinase -
  FH974_RS01910 (FH974_01910) pilD 388917..389786 (-) 870 WP_047886944.1 A24 family peptidase Machinery gene
  FH974_RS01915 (FH974_01915) pilC 390062..391282 (-) 1221 WP_047886943.1 type II secretion system F family protein Machinery gene
  FH974_RS01920 (FH974_01920) pilB 391338..393038 (-) 1701 WP_047886942.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FH974_RS01925 (FH974_01925) pilA 393047..393469 (-) 423 WP_047886941.1 pilin Machinery gene
  FH974_RS01930 (FH974_01930) nadC 393940..394827 (-) 888 WP_047887027.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FH974_RS01935 (FH974_01935) ampD 395127..395690 (+) 564 WP_047886939.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 45005.85 Da        Isoelectric Point: 10.1749

>NTDB_id=545047 FH974_RS01915 WP_047886943.1 390062..391282(-) (pilC) [Photobacterium ganghwense strain C2.2]
MAQAGKIRYYHWRGVNPSGKKLSGVILGFQEQEVRAKLTEQMIQVKKIRHRNPSTFSKLKNQLKPTDVTTITRQLATMIN
AGVPVVQALKLMADSHHKAEARATLTQVSVQVESGSSLARAMRNSSPLFDTFYCDLVSTGEQTGHLGQVFDRIATYREKN
EAMRKKVIKAMIYPSIVTLTAVGVTVMMLLFVIPQFASIFNSFGAELPWFTRQVISASDWLVDSGKYLAILLLLGFITLR
YSYQRSAPLRYRWHRSMLKIPVIGEVLLKATVARFARTLATTFSAGIPLLSGLQSAAKTAGNLYIEKAAMEAHGSTASGM
PLHIALRQSDVFPELMLQMTMIGEESGSLDDMLNKMAMFYEDDVDNTVDNLGKIIEPLIIIFLGTVVGGLLVAMYMPIFK
LMSVIG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=545047 FH974_RS01915 WP_047886943.1 390062..391282(-) (pilC) [Photobacterium ganghwense strain C2.2]
ATGGCGCAAGCCGGAAAAATCCGTTACTACCACTGGCGGGGGGTTAACCCGTCAGGCAAAAAGCTCTCCGGGGTGATCCT
TGGTTTCCAGGAGCAGGAAGTCAGGGCCAAGCTCACAGAGCAGATGATCCAGGTAAAAAAAATTCGCCACCGTAACCCGT
CTACGTTCAGTAAACTAAAAAATCAGCTGAAGCCAACCGATGTTACGACCATTACCCGTCAACTGGCGACCATGATTAAC
GCCGGCGTTCCCGTCGTCCAGGCGCTCAAACTCATGGCCGACAGCCATCACAAAGCAGAAGCACGCGCCACACTGACCCA
GGTATCCGTCCAGGTCGAGTCTGGCTCCTCTCTCGCCCGGGCGATGCGCAACAGCTCCCCACTGTTTGATACCTTCTATT
GCGACCTTGTCAGTACCGGCGAACAAACCGGTCATTTGGGCCAGGTATTTGACCGGATCGCGACCTATCGGGAAAAAAAT
GAAGCCATGCGGAAAAAAGTGATCAAAGCCATGATCTATCCATCCATCGTCACGCTGACAGCCGTCGGCGTAACGGTCAT
GATGCTGCTGTTTGTCATTCCGCAGTTCGCCAGTATTTTCAATAGCTTTGGTGCAGAGTTGCCGTGGTTTACCCGTCAGG
TCATTTCGGCTTCTGACTGGTTGGTTGATTCCGGGAAATACCTGGCCATCCTGTTGTTGCTGGGATTTATCACGTTACGT
TACAGCTACCAGCGTTCTGCCCCTCTGCGCTATCGCTGGCACCGCTCTATGCTTAAGATTCCGGTGATTGGCGAGGTATT
ACTGAAAGCCACAGTCGCAAGGTTTGCCCGCACCCTGGCAACCACTTTCAGTGCAGGTATCCCATTGCTCAGCGGGTTAC
AGTCCGCGGCAAAAACTGCCGGTAACCTGTATATCGAAAAAGCCGCGATGGAGGCCCACGGCAGCACAGCATCTGGCATG
CCTTTGCATATTGCGTTACGCCAGAGCGATGTATTTCCAGAACTCATGCTGCAAATGACGATGATTGGCGAGGAGTCCGG
CTCTCTGGACGATATGCTCAATAAAATGGCGATGTTTTATGAAGATGATGTCGATAATACCGTCGACAACCTGGGAAAAA
TTATTGAGCCCCTGATCATTATTTTCCTGGGAACGGTTGTTGGCGGATTACTCGTTGCCATGTATATGCCGATATTCAAA
CTGATGAGTGTGATTGGGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J1JVL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

54.75

98.522

0.539
  pilC Vibrio campbellii strain DS40M4

52.109

99.261

0.517
  pilC Pseudomonas stutzeri DSM 10701

43.415

100

0.438
  pilG Neisseria meningitidis 44/76-A

42.222

99.754

0.421
  pilG Neisseria gonorrhoeae MS11

41.872

100

0.419
  pilC Acinetobacter baylyi ADP1

40.199

99.261

0.399
  pilC Acinetobacter baumannii D1279779

39.547

97.783

0.387
  pilC Legionella pneumophila strain ERS1305867

39.196

98.03

0.384