Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   JZY07_RS00750 Genome accession   NZ_CP071305
Coordinates   121670..122620 (+) Length   316 a.a.
NCBI ID   WP_024412239.1    Uniprot ID   -
Organism   Streptococcus suis strain SC183     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 116670..127620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZY07_RS00740 (JZY07_00740) - 120232..120606 (+) 375 WP_024412237.1 DUF1033 family protein -
  JZY07_RS00745 (JZY07_00745) - 120634..121584 (-) 951 WP_024412238.1 S66 peptidase family protein -
  JZY07_RS00750 (JZY07_00750) comYA 121670..122620 (+) 951 WP_024412239.1 competence type IV pilus ATPase ComGA Machinery gene
  JZY07_RS00755 (JZY07_00755) comYB 122532..123569 (+) 1038 WP_050571918.1 competence type IV pilus assembly protein ComGB Machinery gene
  JZY07_RS00760 (JZY07_00760) comYC 123571..123852 (+) 282 WP_024387069.1 competence type IV pilus major pilin ComGC Machinery gene
  JZY07_RS00765 (JZY07_00765) comGD 123833..124240 (+) 408 WP_024387070.1 competence type IV pilus minor pilin ComGD -
  JZY07_RS00770 (JZY07_00770) comYE 124212..124505 (+) 294 WP_011921722.1 competence type IV pilus minor pilin ComGE Machinery gene
  JZY07_RS00775 (JZY07_00775) comGF/cglF 124492..124926 (+) 435 WP_079268055.1 competence type IV pilus minor pilin ComGF Machinery gene
  JZY07_RS00780 (JZY07_00780) comGG 124904..125431 (+) 528 WP_024399584.1 competence type IV pilus minor pilin ComGG -
  JZY07_RS00785 (JZY07_00785) - 125577..126440 (+) 864 WP_105141859.1 IS982 family transposase -
  JZY07_RS00790 (JZY07_00790) - 126685..126852 (-) 168 WP_171992300.1 hypothetical protein -
  JZY07_RS11475 - 126896..127156 (-) 261 WP_228380968.1 hypothetical protein -
  JZY07_RS11480 - 127348..127563 (-) 216 WP_228380969.1 hypothetical protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35455.33 Da        Isoelectric Point: 5.6938

>NTDB_id=544837 JZY07_RS00750 WP_024412239.1 121670..122620(+) (comYA) [Streptococcus suis strain SC183]
MIQEKARKMIEEAVADRVSDIYLVPRGQGYQVYHRIMDEREFVQDLAEEEVTAMISHFKFLAGLNVGEKRRSQQGSCDYD
YGSGEISLRLSTVGDYRGKESLVIRLLYDNDKELKFWFEAAERLAEEIKGRGLYLFSGPVGSGKTTLMYHLARLKFPDKQ
ILTIEDPVEIKQEDMLQLQLNEAIGATYDNLIKLSLRHRPDLLIIGEIRDVETARAVIRASLTGATVFSTVHARSISGVY
TRMLELGVSPEELNNALQGIAYQRLIGGGGVVDFAKGNYQNHSADQWNAQIDRLFAAGHISLRQAETEKIALGSPA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=544837 JZY07_RS00750 WP_024412239.1 121670..122620(+) (comYA) [Streptococcus suis strain SC183]
ATGATTCAAGAAAAAGCAAGAAAGATGATTGAAGAGGCGGTGGCAGATAGGGTCAGTGATATTTATCTGGTTCCTCGTGG
TCAGGGCTACCAAGTCTACCATCGTATCATGGACGAGCGAGAGTTTGTGCAAGACTTGGCTGAGGAGGAAGTAACAGCCA
TGATCAGCCATTTCAAGTTTTTAGCAGGTTTAAATGTTGGTGAAAAACGCCGTAGCCAGCAGGGTTCCTGTGACTATGAT
TATGGTAGCGGAGAGATTTCACTTCGCTTATCAACTGTCGGTGATTATCGTGGCAAGGAAAGTCTGGTTATCCGCCTGCT
CTATGACAATGACAAGGAACTCAAGTTCTGGTTTGAGGCGGCCGAGCGGCTTGCAGAAGAAATCAAGGGACGAGGGCTCT
ACCTTTTTTCGGGTCCAGTCGGCTCTGGTAAGACCACACTTATGTACCATCTTGCCAGGCTGAAATTCCCAGACAAGCAG
ATTTTGACCATCGAGGATCCTGTCGAAATCAAACAGGAGGACATGCTGCAACTCCAGCTCAATGAAGCCATCGGAGCCAC
CTACGACAATCTAATCAAACTGTCCCTCCGTCATCGACCAGACTTGCTCATCATCGGTGAGATTCGGGATGTAGAAACCG
CTCGAGCAGTCATTCGAGCCAGCCTGACGGGAGCTACCGTTTTCTCAACAGTTCATGCAAGGTCTATTTCAGGTGTCTAT
ACCCGTATGTTAGAACTAGGTGTCAGTCCTGAGGAGTTAAATAATGCCCTTCAAGGGATTGCCTATCAACGCTTGATTGG
GGGAGGAGGTGTAGTAGATTTTGCAAAGGGAAATTACCAAAACCATTCCGCAGACCAGTGGAATGCGCAAATTGATCGCC
TTTTTGCAGCAGGACATATCAGTCTTCGGCAGGCAGAAACAGAAAAAATTGCCCTTGGTTCGCCAGCGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus gordonii str. Challis substr. CH1

68.71

98.101

0.674
  comYA Streptococcus mutans UA159

67.203

98.418

0.661
  comYA Streptococcus mutans UA140

67.203

98.418

0.661
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

65.273

98.418

0.642
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

65.273

98.418

0.642
  comGA/cglA/cilD Streptococcus pneumoniae D39

65.273

98.418

0.642
  comGA/cglA/cilD Streptococcus pneumoniae R6

65.273

98.418

0.642
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

65.273

98.418

0.642
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

64.516

98.101

0.633
  comGA Lactococcus lactis subsp. cremoris KW2

53.312

100

0.535
  comGA Latilactobacillus sakei subsp. sakei 23K

41.155

87.658

0.361