Detailed information NTG0544838

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: JZY07_RS00755
• Genome accession: NZ_CP071305
• Coordinates: 122532..123569 (+)
• Length: 345 a.a.
• NCBI ID: WP_050571918.1
• Uniprot ID: -
• Organism: Streptococcus suis strain SC183
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 117532..128569

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JZY07_RS00740 (JZY07_00740)	-	120232..120606 (+)	375	WP_024412237.1	DUF1033 family protein	-
JZY07_RS00745 (JZY07_00745)	-	120634..121584 (-)	951	WP_024412238.1	S66 peptidase family protein	-
JZY07_RS00750 (JZY07_00750)	comYA	121670..122620 (+)	951	WP_024412239.1	competence type IV pilus ATPase ComGA	Machinery gene
JZY07_RS00755 (JZY07_00755)	comYB	122532..123569 (+)	1038	WP_050571918.1	competence type IV pilus assembly protein ComGB	Machinery gene
JZY07_RS00760 (JZY07_00760)	comYC	123571..123852 (+)	282	WP_024387069.1	competence type IV pilus major pilin ComGC	Machinery gene
JZY07_RS00765 (JZY07_00765)	comGD	123833..124240 (+)	408	WP_024387070.1	competence type IV pilus minor pilin ComGD	-
JZY07_RS00770 (JZY07_00770)	comYE	124212..124505 (+)	294	WP_011921722.1	competence type IV pilus minor pilin ComGE	Machinery gene
JZY07_RS00775 (JZY07_00775)	comGF/cglF	124492..124926 (+)	435	WP_079268055.1	competence type IV pilus minor pilin ComGF	Machinery gene
JZY07_RS00780 (JZY07_00780)	comGG	124904..125431 (+)	528	WP_024399584.1	competence type IV pilus minor pilin ComGG	-
JZY07_RS00785 (JZY07_00785)	-	125577..126440 (+)	864	WP_105141859.1	IS982 family transposase	-
JZY07_RS00790 (JZY07_00790)	-	126685..126852 (-)	168	WP_171992300.1	hypothetical protein	-
JZY07_RS11475	-	126896..127156 (-)	261	WP_228380968.1	hypothetical protein	-
JZY07_RS11480	-	127348..127563 (-)	216	WP_228380969.1	hypothetical protein	-
JZY07_RS11485	-	127612..127809 (-)	198	WP_228380148.1	hypothetical protein	-

Sequence

Protein

• Length: 345 a.a.
• Molecular weight: 39030.06 Da
• Isoelectric Point: 9.5005

>NTDB_id=544838 JZY07_RS00755 WP_050571918.1 122532..123569(+) (comYB) [Streptococcus suis strain SC183]
MRKLIAFLQQDISVFGRQKQKKLPLVRQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADPYTQVLSDGLLAGKPFSSLL
ADLRFSDAVVTQVALAEVHGNTSLSLSHIQSYLENVSKVRKKLIEVATYPIILLGFLLLIMLGLKNYLLPQLEEGNAATV
LINHLPTIFLSLCGLSLVAVLAGLVWFRKTNKIRVFSCLAALPFFGKLIQTYLTAYYAREWGSLIGQGLDLPQIVGLMQE
QQSQLFREIGQDLERSLSNGRSFNEHIKTYAFFKRELSLIVEYGQVKSKLGSELTVYAAECWEDFFSRVNRAMQLIQPLV
FLFVALMVVLIYAAMLLPIYQNMEL

Nucleotide

• Length: 1038 bp

>NTDB_id=544838 JZY07_RS00755 WP_050571918.1 122532..123569(+) (comYB) [Streptococcus suis strain SC183]
ATGCGCAAATTGATCGCCTTTTTGCAGCAGGACATATCAGTCTTCGGCAGGCAGAAACAGAAAAAATTGCCCTTGGTTCG
CCAGCGTAAGGTCATTGAGCTTTTCAATAATCTTTTTGCTAGTGGTTTTCATTTGGGGGAGATTGTTGATTTCCTCAAAC
GCAGTCAGCTTCTGGCAGATCCCTATACCCAGGTCTTGTCAGACGGGCTGTTAGCAGGCAAACCCTTTTCAAGTTTGCTG
GCGGATTTGCGGTTTTCAGATGCGGTGGTCACACAGGTGGCTCTGGCAGAAGTTCATGGCAATACCAGCCTCAGTTTGAG
CCATATCCAGTCCTATTTGGAAAATGTCAGCAAGGTTCGTAAAAAATTGATTGAGGTGGCGACCTATCCGATTATTTTAC
TAGGGTTTCTGCTCTTGATTATGCTGGGCTTGAAAAACTATCTTCTGCCCCAGTTGGAGGAAGGCAATGCAGCGACCGTG
CTGATCAATCATCTACCGACTATCTTTTTATCCCTCTGTGGACTTAGTTTGGTGGCGGTCTTAGCTGGTCTTGTTTGGTT
TCGCAAAACTAACAAAATCAGGGTCTTTTCCTGCTTAGCAGCTCTGCCATTTTTCGGAAAACTCATCCAAACCTATCTGA
CGGCCTATTACGCCAGGGAGTGGGGGAGTTTGATTGGGCAAGGCTTGGACCTGCCGCAGATTGTGGGCTTGATGCAAGAG
CAGCAATCGCAGCTTTTTCGTGAGATTGGTCAGGACCTGGAGCGGTCGCTCTCAAATGGTCGTAGTTTTAACGAACACAT
TAAGACCTACGCCTTTTTTAAGCGGGAGCTGAGTTTGATTGTCGAGTACGGTCAGGTCAAGTCCAAGTTGGGTAGCGAGT
TGACAGTTTATGCAGCTGAGTGTTGGGAGGATTTCTTCTCTCGGGTCAATAGAGCCATGCAGCTGATTCAACCGCTGGTC
TTTCTCTTTGTGGCCTTAATGGTCGTTCTCATCTACGCAGCCATGTTGCTGCCGATTTATCAAAATATGGAGTTGTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (218-338)

• Type II secretion system (T2SS), protein F (T2SSF) (33-150)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus gordonii str. Challis substr. CH1	63.158	99.13	0.626
comGB/cglB	Streptococcus mitis SK321	60.896	97.101	0.591
comGB/cglB	Streptococcus mitis NCTC 12261	60.896	97.101	0.591
comGB/cglB	Streptococcus pneumoniae D39	60.299	97.101	0.586
comGB/cglB	Streptococcus pneumoniae Rx1	60.299	97.101	0.586
comGB/cglB	Streptococcus pneumoniae R6	60.299	97.101	0.586
comGB/cglB	Streptococcus pneumoniae TIGR4	60.299	97.101	0.586
comYB	Streptococcus mutans UA140	58.601	99.42	0.583
comYB	Streptococcus mutans UA159	58.601	99.42	0.583
comGB	Lactococcus lactis subsp. cremoris KW2	50.148	97.681	0.49