Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   JZY07_RS00770 Genome accession   NZ_CP071305
Coordinates   124212..124505 (+) Length   97 a.a.
NCBI ID   WP_011921722.1    Uniprot ID   -
Organism   Streptococcus suis strain SC183     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 119212..129505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZY07_RS00740 (JZY07_00740) - 120232..120606 (+) 375 WP_024412237.1 DUF1033 family protein -
  JZY07_RS00745 (JZY07_00745) - 120634..121584 (-) 951 WP_024412238.1 S66 peptidase family protein -
  JZY07_RS00750 (JZY07_00750) comYA 121670..122620 (+) 951 WP_024412239.1 competence type IV pilus ATPase ComGA Machinery gene
  JZY07_RS00755 (JZY07_00755) comYB 122532..123569 (+) 1038 WP_050571918.1 competence type IV pilus assembly protein ComGB Machinery gene
  JZY07_RS00760 (JZY07_00760) comYC 123571..123852 (+) 282 WP_024387069.1 competence type IV pilus major pilin ComGC Machinery gene
  JZY07_RS00765 (JZY07_00765) comGD 123833..124240 (+) 408 WP_024387070.1 competence type IV pilus minor pilin ComGD -
  JZY07_RS00770 (JZY07_00770) comYE 124212..124505 (+) 294 WP_011921722.1 competence type IV pilus minor pilin ComGE Machinery gene
  JZY07_RS00775 (JZY07_00775) comGF/cglF 124492..124926 (+) 435 WP_079268055.1 competence type IV pilus minor pilin ComGF Machinery gene
  JZY07_RS00780 (JZY07_00780) comGG 124904..125431 (+) 528 WP_024399584.1 competence type IV pilus minor pilin ComGG -
  JZY07_RS00785 (JZY07_00785) - 125577..126440 (+) 864 WP_105141859.1 IS982 family transposase -
  JZY07_RS00790 (JZY07_00790) - 126685..126852 (-) 168 WP_171992300.1 hypothetical protein -
  JZY07_RS11475 - 126896..127156 (-) 261 WP_228380968.1 hypothetical protein -
  JZY07_RS11480 - 127348..127563 (-) 216 WP_228380969.1 hypothetical protein -
  JZY07_RS11485 - 127612..127809 (-) 198 WP_228380148.1 hypothetical protein -
  JZY07_RS00805 (JZY07_00805) - 127806..128645 (-) 840 WP_024399985.1 ATP-binding protein -
  JZY07_RS00810 (JZY07_00810) - 128657..129501 (-) 845 Protein_128 phage replisome organizer N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10817.70 Da        Isoelectric Point: 9.8348

>NTDB_id=544840 JZY07_RS00770 WP_011921722.1 124212..124505(+) (comYE) [Streptococcus suis strain SC183]
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQVWELEQQEVFNLAQMAVQTKQDDLALNGVAVQVQRTAE
RVAVFHEGKEVLSVVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=544840 JZY07_RS00770 WP_011921722.1 124212..124505(+) (comYE) [Streptococcus suis strain SC183]
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATTTTATTAGAAAGTTTGGTAGCCCTAGCTACCTTAGTGACCAT
TTGTAGCTTGATTTTATCAGCGGTGGATGCAGGTCGTAGGCGGCAGGTTTGGGAATTGGAACAACAGGAGGTTTTCAACT
TAGCACAGATGGCTGTCCAGACAAAACAAGATGACCTAGCCTTAAACGGAGTTGCAGTTCAGGTTCAACGAACTGCGGAA
AGAGTTGCGGTTTTCCATGAAGGAAAGGAGGTTTTATCGGTTGTTAAAAAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

51.546

100

0.515
  comYE Streptococcus mutans UA159

51.546

100

0.515
  comGE/cglE Streptococcus pneumoniae Rx1

38.043

94.845

0.361
  comGE/cglE Streptococcus pneumoniae D39

38.043

94.845

0.361
  comGE/cglE Streptococcus pneumoniae R6

38.043

94.845

0.361
  comGE/cglE Streptococcus pneumoniae TIGR4

38.043

94.845

0.361