Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | LPB19_RS15160 | Genome accession | NZ_CP071247 |
| Coordinates | 3325446..3325889 (-) | Length | 147 a.a. |
| NCBI ID | WP_323127892.1 | Uniprot ID | - |
| Organism | Marinobacter salinisoli strain LPB0319 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3320446..3330889
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPB19_RS15145 (LPB19_15145) | - | 3320780..3322141 (+) | 1362 | WP_206643715.1 | MBL fold metallo-hydrolase | - |
| LPB19_RS15150 (LPB19_15150) | - | 3322158..3323639 (-) | 1482 | WP_206643716.1 | O-antigen ligase | - |
| LPB19_RS15155 (LPB19_15155) | - | 3323676..3325370 (-) | 1695 | WP_206643717.1 | PglL family O-oligosaccharyltransferase | - |
| LPB19_RS15160 (LPB19_15160) | pilA/pilAI | 3325446..3325889 (-) | 444 | WP_323127892.1 | pilin | Machinery gene |
| LPB19_RS15165 (LPB19_15165) | pilB | 3326255..3327970 (+) | 1716 | WP_206643718.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| LPB19_RS15170 (LPB19_15170) | pilC | 3327973..3329193 (+) | 1221 | WP_206643719.1 | type II secretion system F family protein | Machinery gene |
| LPB19_RS15175 (LPB19_15175) | pilD | 3329264..3330139 (+) | 876 | WP_206643720.1 | A24 family peptidase | Machinery gene |
| LPB19_RS15180 (LPB19_15180) | coaE | 3330143..3330742 (+) | 600 | WP_206643721.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 147 a.a. Molecular weight: 14799.86 Da Isoelectric Point: 8.0979
>NTDB_id=544269 LPB19_RS15160 WP_323127892.1 3325446..3325889(-) (pilA/pilAI) [Marinobacter salinisoli strain LPB0319]
MMKNNQAQNGFTLIELMIVVAIIGILAAIAIPAYQDYISKSKATAALADIAAGKTSYELTFTSEGADAISSPAAIGLASG
SGNCTTISVTKPGTNGSATGAIKCDIKNPGRLGTSASIQLNRTAAGLYECSASVSDAKYLPSGCSKS
MMKNNQAQNGFTLIELMIVVAIIGILAAIAIPAYQDYISKSKATAALADIAAGKTSYELTFTSEGADAISSPAAIGLASG
SGNCTTISVTKPGTNGSATGAIKCDIKNPGRLGTSASIQLNRTAAGLYECSASVSDAKYLPSGCSKS
Nucleotide
Download Length: 444 bp
>NTDB_id=544269 LPB19_RS15160 WP_323127892.1 3325446..3325889(-) (pilA/pilAI) [Marinobacter salinisoli strain LPB0319]
ATGATGAAAAACAACCAGGCACAGAACGGTTTCACCCTGATTGAATTGATGATTGTTGTAGCGATCATCGGTATTCTGGC
TGCGATCGCGATTCCGGCCTATCAGGATTACATCTCCAAGTCTAAGGCGACTGCTGCCCTGGCTGACATCGCTGCAGGTA
AGACAAGCTACGAGCTGACTTTTACCTCTGAAGGTGCAGATGCTATCAGTAGTCCCGCTGCTATCGGTTTGGCCTCCGGC
TCTGGGAATTGCACAACTATCAGCGTAACCAAACCTGGAACTAATGGTTCTGCTACTGGTGCGATCAAGTGCGACATTAA
GAATCCAGGGCGTCTCGGTACCAGCGCATCGATTCAGCTCAACCGCACGGCGGCTGGTCTGTATGAGTGCTCAGCAAGCG
TTTCTGATGCAAAATACCTGCCTTCTGGCTGTTCTAAGTCTTAA
ATGATGAAAAACAACCAGGCACAGAACGGTTTCACCCTGATTGAATTGATGATTGTTGTAGCGATCATCGGTATTCTGGC
TGCGATCGCGATTCCGGCCTATCAGGATTACATCTCCAAGTCTAAGGCGACTGCTGCCCTGGCTGACATCGCTGCAGGTA
AGACAAGCTACGAGCTGACTTTTACCTCTGAAGGTGCAGATGCTATCAGTAGTCCCGCTGCTATCGGTTTGGCCTCCGGC
TCTGGGAATTGCACAACTATCAGCGTAACCAAACCTGGAACTAATGGTTCTGCTACTGGTGCGATCAAGTGCGACATTAA
GAATCCAGGGCGTCTCGGTACCAGCGCATCGATTCAGCTCAACCGCACGGCGGCTGGTCTGTATGAGTGCTCAGCAAGCG
TTTCTGATGCAAAATACCTGCCTTCTGGCTGTTCTAAGTCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
46.711 |
100 |
0.483 |
| pilA | Vibrio cholerae strain A1552 |
43.333 |
100 |
0.442 |
| pilA | Vibrio cholerae C6706 |
43.333 |
100 |
0.442 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
43.333 |
100 |
0.442 |
| pilA | Pseudomonas aeruginosa PAK |
40 |
100 |
0.408 |
| pilA | Acinetobacter baumannii strain A118 |
42.857 |
95.238 |
0.408 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
40.714 |
95.238 |
0.388 |
| comP | Acinetobacter baylyi ADP1 |
37.415 |
100 |
0.374 |