Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   LPB19_RS15175 Genome accession   NZ_CP071247
Coordinates   3329264..3330139 (+) Length   291 a.a.
NCBI ID   WP_206643720.1    Uniprot ID   -
Organism   Marinobacter salinisoli strain LPB0319     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3324264..3335139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB19_RS15160 (LPB19_15160) pilA/pilAI 3325446..3325889 (-) 444 WP_323127892.1 pilin Machinery gene
  LPB19_RS15165 (LPB19_15165) pilB 3326255..3327970 (+) 1716 WP_206643718.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LPB19_RS15170 (LPB19_15170) pilC 3327973..3329193 (+) 1221 WP_206643719.1 type II secretion system F family protein Machinery gene
  LPB19_RS15175 (LPB19_15175) pilD 3329264..3330139 (+) 876 WP_206643720.1 A24 family peptidase Machinery gene
  LPB19_RS15180 (LPB19_15180) coaE 3330143..3330742 (+) 600 WP_206643721.1 dephospho-CoA kinase -
  LPB19_RS15185 (LPB19_15185) - 3330714..3331832 (+) 1119 WP_206643722.1 hypothetical protein -
  LPB19_RS15190 (LPB19_15190) tsaA 3331835..3332578 (+) 744 WP_206643723.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  LPB19_RS15195 (LPB19_15195) - 3332622..3334973 (+) 2352 WP_206643724.1 response regulator -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32047.14 Da        Isoelectric Point: 6.3195

>NTDB_id=544272 LPB19_RS15175 WP_206643720.1 3329264..3330139(+) (pilD) [Marinobacter salinisoli strain LPB0319]
MPSIDTFLATPAMLYLAVVLVSLCIGSFLNVVILRLPKMMHQEWRCQCEEFLEVADRDRKQEETITLSKPASTCPSCGHG
IRAWENIPVISYLLLGGKCSHCKTRISARYPIIEALTAAFSVVTIVLLGPSEAALWALLLVWALVALTVIDLDTQLLPDN
ITLPLMWLGLVLNYFSVFTDFSSAFWGAVAGYLSLWSVYWLFKLVTGKEGMGHGDFKLLAALGAWLGWQLLPAIILLSSI
VGAVVGISLMIFKQHGREVPIPFGPYLAAAGLLCLWFGPEIQVLWYGFLGV

Nucleotide


Download         Length: 876 bp        

>NTDB_id=544272 LPB19_RS15175 WP_206643720.1 3329264..3330139(+) (pilD) [Marinobacter salinisoli strain LPB0319]
ATGCCCTCTATCGATACATTCCTCGCTACCCCGGCGATGCTTTATTTGGCCGTCGTCCTTGTCTCCCTCTGCATCGGCAG
CTTCCTGAACGTCGTCATCCTTCGGCTGCCGAAAATGATGCACCAGGAGTGGCGCTGCCAGTGCGAAGAGTTTCTTGAGG
TTGCTGACCGCGATCGAAAGCAGGAAGAAACCATCACCCTGTCGAAACCCGCATCAACCTGCCCGTCCTGCGGTCATGGC
ATCCGGGCATGGGAAAACATTCCGGTAATCAGCTACCTTCTGCTCGGCGGGAAATGCTCTCACTGCAAAACCCGGATTTC
AGCCCGCTATCCGATCATCGAAGCACTCACCGCCGCCTTCTCTGTCGTCACCATCGTGTTACTCGGACCGTCTGAAGCGG
CACTGTGGGCGCTGCTGCTCGTCTGGGCGCTGGTCGCTTTGACCGTGATTGATCTGGACACCCAGCTACTGCCGGACAAC
ATCACCCTGCCCCTTATGTGGCTGGGACTGGTGCTCAACTACTTTAGCGTTTTCACGGATTTCTCGTCCGCGTTCTGGGG
CGCGGTGGCAGGCTATCTGTCGCTGTGGTCCGTGTACTGGTTATTCAAACTGGTCACCGGCAAGGAAGGCATGGGGCACG
GCGATTTCAAACTGCTCGCCGCGCTCGGCGCCTGGCTCGGCTGGCAGCTGCTGCCGGCCATCATCTTGCTGTCCTCGATT
GTCGGCGCGGTTGTCGGCATAAGTCTTATGATCTTCAAACAACACGGCCGTGAAGTACCCATTCCATTTGGCCCCTACCT
CGCGGCGGCTGGTTTGCTCTGCCTCTGGTTCGGCCCGGAAATACAAGTCCTCTGGTATGGCTTCCTGGGGGTGTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

52.817

97.595

0.515
  pilD Acinetobacter nosocomialis M2

52.465

97.595

0.512
  pilD Vibrio campbellii strain DS40M4

51.93

97.938

0.509
  pilD Vibrio cholerae strain A1552

50.877

97.938

0.498
  pilD Neisseria gonorrhoeae MS11

49.064

91.753

0.45