Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LPB19_RS15170 Genome accession   NZ_CP071247
Coordinates   3327973..3329193 (+) Length   406 a.a.
NCBI ID   WP_206643719.1    Uniprot ID   -
Organism   Marinobacter salinisoli strain LPB0319     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3322973..3334193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB19_RS15155 (LPB19_15155) - 3323676..3325370 (-) 1695 WP_206643717.1 PglL family O-oligosaccharyltransferase -
  LPB19_RS15160 (LPB19_15160) pilA/pilAI 3325446..3325889 (-) 444 WP_323127892.1 pilin Machinery gene
  LPB19_RS15165 (LPB19_15165) pilB 3326255..3327970 (+) 1716 WP_206643718.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LPB19_RS15170 (LPB19_15170) pilC 3327973..3329193 (+) 1221 WP_206643719.1 type II secretion system F family protein Machinery gene
  LPB19_RS15175 (LPB19_15175) pilD 3329264..3330139 (+) 876 WP_206643720.1 A24 family peptidase Machinery gene
  LPB19_RS15180 (LPB19_15180) coaE 3330143..3330742 (+) 600 WP_206643721.1 dephospho-CoA kinase -
  LPB19_RS15185 (LPB19_15185) - 3330714..3331832 (+) 1119 WP_206643722.1 hypothetical protein -
  LPB19_RS15190 (LPB19_15190) tsaA 3331835..3332578 (+) 744 WP_206643723.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44411.46 Da        Isoelectric Point: 9.0715

>NTDB_id=544271 LPB19_RS15170 WP_206643719.1 3327973..3329193(+) (pilC) [Marinobacter salinisoli strain LPB0319]
MAEQAQKLEAFIWEGKDRKGNKAQGELTGQSLALVKAQLRKQGIIPEKVKKKPKPLFGGSKKITPFDIAMLTRQLATMMK
AGVPLVQSFDIVADGLENKGLQELVMTIRTDIASGTSFAGALRKHPKHFDDLYCNLVDSGEKAGALEAMLDRIAMYLEKT
ELLKKKVKKAMTYPIAVIVVAIIVTAILLVKVVPQFETLFQGFGADLPVFTQMVIELSEWLQKWWFAVLLGIVGVIFVFK
EAVRRSKKFSDLVDKYVLKIPVMGDILDKSAVAKFGRVLSTTFAAGVPLVDALDSVAGATGNAVYRDAINRIKTDVSSGT
QLQASMRQQELFPAMAVQLTAIGEESGNLDDMLTKVAEHYENVVDDMVDNLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
MGQVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=544271 LPB19_RS15170 WP_206643719.1 3327973..3329193(+) (pilC) [Marinobacter salinisoli strain LPB0319]
ATGGCAGAACAAGCACAAAAGCTGGAAGCGTTTATCTGGGAAGGAAAGGATCGCAAGGGCAACAAAGCTCAAGGCGAGCT
GACAGGGCAAAGCCTGGCATTAGTGAAAGCCCAGCTCAGGAAGCAGGGTATCATTCCAGAGAAGGTCAAGAAAAAACCCA
AACCCCTGTTTGGTGGCAGCAAAAAGATTACGCCTTTCGACATCGCGATGTTGACTCGCCAGCTTGCCACCATGATGAAA
GCCGGAGTTCCCCTTGTTCAGAGCTTTGATATCGTTGCCGATGGGCTTGAAAACAAAGGCCTTCAGGAACTGGTAATGAC
CATCCGCACTGACATCGCCTCTGGTACCAGCTTCGCTGGCGCACTTCGAAAGCACCCAAAACACTTCGACGACCTTTACT
GCAACTTGGTTGACTCTGGTGAAAAGGCAGGGGCGCTGGAAGCCATGCTCGACAGGATCGCCATGTATCTTGAGAAAACA
GAGCTGTTAAAAAAGAAGGTCAAGAAGGCAATGACCTACCCAATCGCAGTTATTGTGGTAGCCATCATCGTAACAGCGAT
TCTTCTGGTCAAAGTCGTCCCTCAATTCGAGACGCTCTTTCAAGGTTTCGGAGCAGACCTGCCTGTTTTCACCCAGATGG
TTATCGAACTTTCGGAATGGCTCCAGAAGTGGTGGTTTGCTGTACTTTTGGGGATCGTCGGCGTGATTTTCGTGTTTAAA
GAGGCTGTGCGCCGATCCAAAAAGTTCTCCGATCTGGTGGACAAATACGTGCTAAAAATACCAGTGATGGGAGATATTTT
GGATAAATCTGCCGTAGCAAAGTTCGGTCGTGTACTATCCACGACTTTCGCTGCGGGCGTTCCGCTTGTGGACGCACTGG
ACTCAGTAGCTGGCGCCACTGGTAACGCGGTATACAGAGACGCCATTAACCGAATAAAGACCGATGTCTCAAGCGGTACC
CAGTTGCAGGCATCTATGCGTCAGCAAGAGCTTTTTCCGGCAATGGCAGTGCAGTTAACCGCAATCGGAGAGGAGTCAGG
AAATCTCGACGACATGTTGACCAAAGTAGCAGAACATTATGAGAACGTTGTTGACGACATGGTCGACAACCTCACCGCCC
TGATGGAGCCCATGATCATGGCGGTCCTGGGTGTTCTGGTGGGCGGACTGATCATCGCCATGTACCTGCCAATCTTCCAG
ATGGGTCAGGTTGTCGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-397)

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

67.407

99.754

0.672
  pilC Acinetobacter baumannii D1279779

58.765

99.754

0.586
  pilC Acinetobacter baylyi ADP1

57.143

100

0.571
  pilC Legionella pneumophila strain ERS1305867

53.202

100

0.532
  pilG Neisseria gonorrhoeae MS11

44.444

99.754

0.443
  pilG Neisseria meningitidis 44/76-A

44.198

99.754

0.441
  pilC Vibrio cholerae strain A1552

40.64

100

0.406
  pilC Vibrio campbellii strain DS40M4

39.803

100

0.399