Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   JS609_RS18690 Genome accession   NZ_CP071043
Coordinates   3624983..3625324 (-) Length   113 a.a.
NCBI ID   WP_014478203.1    Uniprot ID   A0A0C3GLH9
Organism   Bacillus subtilis isolate ELA2001105     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3619983..3630324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS609_RS18675 (JS609_03677) hepAB 3620223..3622991 (+) 2769 WP_033885048.1 DEAD/DEAH box helicase -
  JS609_RS18680 (JS609_03678) ywpJ 3623119..3623976 (-) 858 WP_017696583.1 phosphatase YwpJ -
  JS609_RS18685 (JS609_03679) glcR 3623982..3624758 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  JS609_RS18690 (JS609_03680) ssbB 3624983..3625324 (-) 342 WP_014478203.1 single-stranded DNA-binding protein SsbB Machinery gene
  JS609_RS18695 (JS609_03681) ywpG 3625401..3625784 (-) 384 WP_014478204.1 DynA interaction protein YwpG -
  JS609_RS18700 (JS609_03682) ywpF 3625959..3626369 (+) 411 WP_003227794.1 YwpF-like family protein -
  JS609_RS18705 (JS609_03683) - 3626509..3626901 (-) 393 Protein_3636 class A sortase -
  JS609_RS21340 - 3626975..3627127 (-) 153 Protein_3637 prealbumin-like fold domain-containing protein -
  JS609_RS18715 (JS609_03684) ywpD 3627161..3627997 (+) 837 WP_032722844.1 sensor histidine kinase -
  JS609_RS18720 (JS609_03685) mscL 3628045..3628440 (-) 396 WP_021445844.1 large conductance mechanosensitive channel protein MscL -
  JS609_RS18725 (JS609_03686) fabZ 3628513..3628938 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  JS609_RS18730 (JS609_03687) rapD 3629130..3630194 (+) 1065 WP_014481149.1 aspartate phosphatase RapD -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12462.11 Da        Isoelectric Point: 7.8150

>NTDB_id=542546 JS609_RS18690 WP_014478203.1 3624983..3625324(-) (ssbB) [Bacillus subtilis isolate ELA2001105]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=542546 JS609_RS18690 WP_014478203.1 3624983..3625324(-) (ssbB) [Bacillus subtilis isolate ELA2001105]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGTTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGAGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C3GLH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

99.115

100

0.991
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389