Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   JYG36_RS25865 Genome accession   NZ_CP071007
Coordinates   5648095..5649336 (-) Length   413 a.a.
NCBI ID   WP_093377169.1    Uniprot ID   -
Organism   Pseudomonas sp. SORT22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5643095..5654336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG36_RS25850 (JYG36_25850) - 5644763..5646358 (-) 1596 WP_213602716.1 AAA family ATPase -
  JYG36_RS25855 (JYG36_25855) aroB 5646375..5647472 (-) 1098 WP_213602717.1 3-dehydroquinate synthase -
  JYG36_RS25860 (JYG36_25860) aroK 5647572..5648090 (-) 519 WP_010222231.1 shikimate kinase AroK -
  JYG36_RS25865 (JYG36_25865) pilQ 5648095..5649336 (-) 1242 WP_093377169.1 type IV pilus secretin PilQ Machinery gene
  JYG36_RS25870 (JYG36_25870) - 5649361..5650215 (-) 855 WP_213602718.1 pilus assembly protein PilP -
  JYG36_RS25875 (JYG36_25875) pilM 5650212..5651294 (-) 1083 WP_093377178.1 pilus assembly protein PilM -
  JYG36_RS25880 (JYG36_25880) - 5651430..5653883 (+) 2454 WP_177329133.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44438.74 Da        Isoelectric Point: 5.3465

>NTDB_id=542182 JYG36_RS25865 WP_093377169.1 5648095..5649336(-) (pilQ) [Pseudomonas sp. SORT22]
MGKGAVVGALIGCCLSAGAFAGKQQYGGEPLSLNFQDVEVRTVLQVLADFSGVNLVASDAVQGKVTLRLQDVPWDQALEL
VLRSKGLEQRKDGNVLLVAPLAELAGSAPSRRELIPIHHARATDIAELFHSLMAHEAGGASHGSLSVDERTNTLVASQSP
ERLEELRRLIGELDVPVRQVMIEARIVEANVDFEKSLGVRWGGQVQLGKGLSLGGGDTFVDLGADRASSSIGFGLVRNSA
LLDLELSAMERTGNGEIISQPKVVTADKETARILKGTEVPYQETSGSGATSVTFREASLSLEVTPQITPDNRVIMVVKVT
KDEPDYLNALDHVPAIRKNEVNAKVRINDGETIVIGGVYSTVQSKVVDKVPFFGDVPYVGRLFRRDVLQEKKSELLVFLT
PRIMSDQAIAVSR

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=542182 JYG36_RS25865 WP_093377169.1 5648095..5649336(-) (pilQ) [Pseudomonas sp. SORT22]
ATGGGCAAGGGGGCTGTGGTTGGGGCGCTGATAGGCTGTTGCCTGTCTGCCGGCGCGTTTGCGGGCAAGCAACAGTACGG
CGGTGAGCCGTTGTCATTGAATTTTCAGGATGTCGAGGTGCGTACGGTACTGCAGGTGCTGGCTGATTTTTCCGGGGTCA
ACCTGGTGGCCAGTGATGCGGTGCAGGGCAAGGTGACCTTGCGCTTGCAGGATGTGCCCTGGGACCAGGCGCTGGAGCTG
GTGCTGCGCAGCAAGGGCCTGGAGCAGCGCAAGGATGGCAATGTATTGCTGGTCGCACCGCTTGCCGAACTGGCCGGGTC
CGCGCCGTCGCGGCGCGAGCTGATACCGATCCACCACGCCAGGGCCACCGATATCGCCGAGCTTTTCCACAGCCTGATGG
CCCATGAGGCCGGCGGCGCCAGCCATGGTTCGCTGAGTGTCGATGAGCGCACCAACACCCTGGTCGCCAGCCAGTCGCCG
GAACGTCTGGAAGAGCTGCGCAGGTTGATCGGCGAACTCGATGTGCCGGTACGCCAGGTCATGATCGAGGCGCGGATCGT
CGAGGCCAACGTCGATTTTGAAAAGAGCCTGGGTGTGCGCTGGGGTGGCCAGGTGCAGTTGGGCAAGGGCTTGAGCCTGG
GTGGTGGCGATACCTTCGTCGACCTTGGCGCGGACCGGGCATCGTCGAGTATCGGCTTTGGCCTGGTGCGCAACAGTGCG
CTGCTCGACCTGGAACTGAGCGCCATGGAGCGCACCGGCAACGGCGAAATCATTTCCCAGCCCAAGGTCGTCACCGCTGA
CAAGGAAACTGCGCGGATCCTCAAGGGCACCGAGGTGCCGTATCAGGAAACCAGCGGCAGCGGCGCTACCTCGGTGACCT
TCCGCGAGGCCTCGCTGTCCCTTGAGGTCACCCCGCAGATCACCCCGGACAACCGTGTAATCATGGTGGTCAAGGTGACC
AAGGACGAGCCCGACTACCTCAACGCCCTGGATCACGTGCCGGCGATCCGTAAAAACGAGGTCAACGCCAAGGTGCGTAT
CAATGATGGCGAGACCATCGTCATCGGCGGCGTGTACTCGACGGTGCAAAGTAAAGTTGTCGACAAGGTGCCATTTTTCG
GCGATGTGCCGTATGTTGGGCGGCTGTTTCGTCGCGATGTTCTACAAGAGAAAAAATCCGAGCTGCTGGTCTTCCTGACT
CCGCGTATCATGAGTGACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(54-100)

Bacterial type II and III secretion system protein (Secretin)

(248-404)

Bacterial type II/III secretion system short domain (Secretin_N)

(114-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

59.633

100

0.63
  pilQ Acinetobacter baumannii strain A118

40.523

100

0.45
  pilQ Acinetobacter baumannii D1279779

40.523

100

0.45
  comQ Acinetobacter baylyi ADP1

41.425

100

0.45
  pilQ Legionella pneumophila strain Lp02

42.043

100

0.429
  pilQ Legionella pneumophila strain ERS1305867

42.043

100

0.429
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

41.647

100

0.429
  pilQ Vibrio cholerae strain A1552

41.647

100

0.429
  pilQ Vibrio campbellii strain DS40M4

41.371

100

0.424
  pilQ Neisseria meningitidis MC58

37.011

100

0.39
  pilQ Neisseria gonorrhoeae strain FA1090

36.916

100

0.383
  pilQ Neisseria meningitidis M1080

36.449

100

0.378