Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JWZ97_RS16600 Genome accession   NZ_CP070491
Coordinates   3880495..3881556 (-) Length   353 a.a.
NCBI ID   WP_205431429.1    Uniprot ID   A0A974VTM0
Organism   Methylococcus sp. EFPC2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3875495..3886556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JWZ97_RS16580 (JWZ97_16580) ispB 3875930..3876952 (-) 1023 WP_205431404.1 octaprenyl diphosphate synthase -
  JWZ97_RS16585 (JWZ97_16585) - 3877063..3877623 (-) 561 WP_205431408.1 Sua5/YciO/YrdC/YwlC family protein -
  JWZ97_RS16590 (JWZ97_16590) topA 3877634..3879937 (-) 2304 WP_205431410.1 type I DNA topoisomerase -
  JWZ97_RS16595 (JWZ97_16595) - 3879996..3880463 (-) 468 WP_205431412.1 DUF494 family protein -
  JWZ97_RS16600 (JWZ97_16600) dprA 3880495..3881556 (-) 1062 WP_205431429.1 DNA-processing protein DprA Machinery gene
  JWZ97_RS16605 (JWZ97_16605) - 3881603..3882631 (-) 1029 WP_205431432.1 LysM peptidoglycan-binding domain-containing protein -
  JWZ97_RS16610 (JWZ97_16610) def 3882830..3883369 (+) 540 WP_205431434.1 peptide deformylase -
  JWZ97_RS16615 (JWZ97_16615) fmt 3883403..3884335 (+) 933 WP_205431436.1 methionyl-tRNA formyltransferase -
  JWZ97_RS16620 (JWZ97_16620) rsmB 3884332..3885612 (+) 1281 WP_205431438.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  JWZ97_RS16625 (JWZ97_16625) - 3885609..3886172 (+) 564 WP_205431440.1 DUF4390 domain-containing protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 36928.23 Da        Isoelectric Point: 6.0456

>NTDB_id=540188 JWZ97_RS16600 WP_205431429.1 3880495..3881556(-) (dprA) [Methylococcus sp. EFPC2]
MRTPRVGPRAFQTLRDHFGSPEGVFSESRAGLTALGLAAATVDGLLAPDWRKVDDDLRWLAEPNRHCLTLDHPDYPLPLR
EIADPPPVLFVEGAPLALGSLQLAVVGSRNPSPTGEKLARDFSRALAEAGWAVTSGLALGIDAAAHRGALEGRGRTVAVA
GTGPDQVYPARHARLAETIVQCGGALVSELPTGTAPQAGNFPRRNRIISGLSRGVLVVEAALRSGSLITARLALEQGREV
FAIPGSIQNPLSRGCNALIKQGAKLVETVQDILEELGVYTPAPAAVPDSGEKPAAPDPALASLLKSVAYEPTSVDTLIAA
TGFAPETITSMLLLLELDGYVIASGGGLYCRIR

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=540188 JWZ97_RS16600 WP_205431429.1 3880495..3881556(-) (dprA) [Methylococcus sp. EFPC2]
ATGCGTACGCCCCGCGTGGGCCCGCGAGCCTTCCAAACCCTTCGGGATCATTTCGGATCGCCCGAAGGGGTCTTTTCCGA
ATCGCGCGCCGGCCTGACCGCACTGGGGCTGGCGGCGGCGACCGTGGATGGGCTGCTCGCGCCCGACTGGCGCAAAGTCG
ACGACGACCTGCGCTGGCTCGCCGAACCGAACCGCCACTGCCTGACGCTCGATCACCCCGACTATCCGTTGCCCTTGCGT
GAAATCGCCGATCCACCGCCCGTGTTGTTCGTCGAGGGCGCCCCCCTCGCACTGGGCAGCCTGCAGCTCGCGGTGGTCGG
CAGCCGGAATCCCTCCCCTACGGGCGAAAAACTGGCCCGTGATTTTTCCCGGGCCTTGGCCGAAGCCGGCTGGGCGGTGA
CCAGCGGGCTGGCCTTGGGCATCGACGCCGCTGCGCACCGGGGCGCGCTGGAGGGACGGGGACGAACGGTAGCGGTCGCC
GGCACCGGGCCGGACCAGGTTTACCCCGCCCGCCACGCCCGCCTGGCCGAGACCATCGTGCAATGCGGCGGCGCCCTGGT
ATCCGAGCTGCCCACCGGCACGGCGCCGCAAGCCGGCAATTTCCCCCGCCGCAACCGCATCATCAGCGGACTGTCGCGCG
GCGTGCTGGTGGTCGAGGCGGCGCTGCGCAGCGGCTCCCTGATCACCGCACGCCTGGCCCTGGAGCAGGGCCGCGAAGTC
TTCGCCATACCCGGCTCCATCCAGAATCCCTTGTCGCGTGGATGCAACGCCTTGATCAAGCAGGGCGCCAAGCTGGTGGA
GACCGTGCAGGACATTTTGGAGGAGTTGGGGGTCTATACCCCTGCCCCGGCTGCGGTTCCGGACAGCGGAGAAAAGCCCG
CGGCCCCCGATCCGGCCCTCGCCTCGCTCTTAAAATCTGTTGCGTATGAACCAACCTCTGTGGATACTCTCATCGCAGCG
ACGGGATTCGCGCCGGAAACCATCACCTCCATGCTGTTGTTGCTGGAACTGGATGGTTACGTCATCGCCTCCGGCGGTGG
ATTGTACTGCCGCATCCGGTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(291-347)

DNA recombination-mediator protein A (DNA_processg_A)

(63-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Legionella pneumophila strain ERS1305867

47.887

100

0.482
  dprA Glaesserella parasuis strain SC1401

47.305

94.618

0.448
  dprA Neisseria gonorrhoeae strain FA1090

40.674

100

0.445
  dprA Neisseria gonorrhoeae MS11

40.415

100

0.442
  dprA Vibrio campbellii strain DS40M4

46.291

95.467

0.442
  dprA Vibrio cholerae strain A1552

49.201

88.669

0.436
  dprA Neisseria meningitidis strain C311

39.175

100

0.431
  dprA Neisseria meningitidis MC58

39.175

100

0.431
  dprA Acinetobacter baylyi ADP1

41.292

100

0.416
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.459

100

0.414
  dprA Acinetobacter baumannii strain A118

40

100

0.402
  dprA Acinetobacter baumannii D1279779

39.943

100

0.399
  dprA Haemophilus influenzae Rd KW20

41.033

93.201

0.382