Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JVX91_RS10295 Genome accession   NZ_CP070356
Coordinates   2209372..2210589 (-) Length   405 a.a.
NCBI ID   WP_205339129.1    Uniprot ID   -
Organism   Pseudomonas sp. PDNC002     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2204372..2215589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JVX91_RS10255 (JVX91_10255) - 2205089..2205259 (-) 171 WP_037011479.1 DUF3094 domain-containing protein -
  JVX91_RS10260 (JVX91_10260) - 2205354..2205983 (-) 630 WP_205339123.1 DUF1780 domain-containing protein -
  JVX91_RS10265 (JVX91_10265) - 2206104..2206538 (+) 435 WP_205339977.1 FAD/FMN-containing dehydrogenase -
  JVX91_RS10270 (JVX91_10270) - 2206535..2207224 (+) 690 WP_205339124.1 energy-coupling factor ABC transporter permease -
  JVX91_RS10275 (JVX91_10275) - 2207332..2207547 (+) 216 WP_205339125.1 hypothetical protein -
  JVX91_RS10280 (JVX91_10280) yacG 2207622..2207825 (-) 204 WP_205339126.1 DNA gyrase inhibitor YacG -
  JVX91_RS10285 (JVX91_10285) coaE 2207822..2208430 (-) 609 WP_205339127.1 dephospho-CoA kinase -
  JVX91_RS10290 (JVX91_10290) pilD 2208496..2209368 (-) 873 WP_205339128.1 A24 family peptidase Machinery gene
  JVX91_RS10295 (JVX91_10295) pilC 2209372..2210589 (-) 1218 WP_205339129.1 type II secretion system F family protein Machinery gene
  JVX91_RS10300 (JVX91_10300) pilB 2210593..2212296 (-) 1704 WP_205339130.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JVX91_RS10305 (JVX91_10305) pilA 2212522..2212947 (+) 426 WP_205339978.1 pilin Machinery gene
  JVX91_RS10310 (JVX91_10310) - 2213154..2214914 (+) 1761 WP_205339131.1 hypothetical protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44128.75 Da        Isoelectric Point: 9.7372

>NTDB_id=539366 JVX91_RS10295 WP_205339129.1 2209372..2210589(-) (pilC) [Pseudomonas sp. PDNC002]
MAEKALKTSVFTWEGTDRKGGKVKGELAGANTALVKAQLRKQGINPLKVRKKGISLLGQGKKIKPMDIALFTRQMATMMG
SGVPLLQSFDIIGEGFDNPNMRKLVDEIKQEVASGNSLANSLRKKPMYFDDLYCNLVDAGEQSGALETLLDRVATYKEKT
ESLKAKIKKAMTYPIAVVVVAVIVSSILLIKVVPQFQSVFSSFGAELPAFTQMVIALSEVLQEWWFIFLIGIFVIAFALR
ELHRRSEKFRDGTDRTILKLPIVGGILYKSAVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFRTAVNRIKQDVSSGT
QLNFSMRTTGVFPSMAIQMAAIGEESGSLDSMLDKVASYYEEEVDNAVDNLTTLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=539366 JVX91_RS10295 WP_205339129.1 2209372..2210589(-) (pilC) [Pseudomonas sp. PDNC002]
ATGGCGGAAAAAGCATTGAAGACCAGTGTCTTTACCTGGGAGGGCACTGATCGAAAGGGCGGGAAGGTCAAGGGGGAGCT
TGCCGGGGCCAATACCGCTCTCGTGAAAGCCCAGTTGCGCAAACAGGGAATCAACCCCCTCAAAGTGCGCAAGAAGGGTA
TTTCGCTGCTTGGCCAGGGCAAGAAAATCAAGCCCATGGACATCGCCCTGTTCACGCGCCAGATGGCGACAATGATGGGT
TCGGGCGTTCCCCTGCTGCAGTCTTTTGACATCATCGGCGAGGGATTCGATAACCCCAACATGCGCAAGCTGGTCGACGA
GATCAAACAGGAAGTTGCCTCCGGCAACAGTCTCGCCAATTCGCTGCGCAAGAAACCGATGTATTTCGACGATCTCTACT
GCAACCTGGTCGATGCAGGGGAACAGTCGGGCGCGCTGGAAACGTTGCTGGACCGCGTTGCCACCTACAAGGAAAAAACC
GAGTCACTCAAGGCCAAGATCAAGAAGGCCATGACATACCCCATTGCGGTGGTAGTCGTCGCGGTCATCGTTTCGTCCAT
TCTGCTGATCAAGGTTGTCCCGCAGTTCCAGTCCGTATTCTCGAGCTTCGGTGCCGAACTGCCAGCTTTCACGCAGATGG
TCATCGCTCTATCTGAAGTTCTGCAAGAGTGGTGGTTCATCTTCCTGATAGGAATATTCGTCATTGCGTTCGCTCTGCGA
GAACTCCACCGTCGCTCGGAAAAATTCAGGGACGGGACAGACCGTACTATTCTTAAGCTGCCTATCGTCGGCGGTATCCT
CTACAAGTCGGCGGTAGCACGTTATGCACGTACCTTGTCGACAACCTTCGCCGCGGGTGTGCCCTTGGTGGAAGCCTTGG
ACTCTGTATCTGGCGCAACTGGCAACGTTGTATTCCGTACAGCAGTCAATCGCATCAAGCAGGACGTCTCCTCCGGCACC
CAACTCAACTTCTCCATGCGGACTACCGGCGTCTTCCCCAGCATGGCCATCCAGATGGCAGCCATCGGAGAAGAATCCGG
TTCTCTGGACTCGATGCTCGATAAGGTCGCCAGCTATTACGAGGAAGAGGTCGACAACGCCGTCGACAACCTGACCACAC
TTATGGAACCCATGATCATGGCTGTTCTCGGGGTCCTCGTCGGCGGCCTGATCATTGCCATGTACCTGCCGATCTTCCAG
TTGGGCTCTGTCGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

79.753

100

0.798
  pilC Acinetobacter baumannii D1279779

60.837

100

0.61
  pilC Acinetobacter baylyi ADP1

59.214

100

0.595
  pilC Legionella pneumophila strain ERS1305867

53.283

97.778

0.521
  pilG Neisseria meningitidis 44/76-A

43.532

99.259

0.432
  pilG Neisseria gonorrhoeae MS11

43.284

99.259

0.43
  pilC Vibrio cholerae strain A1552

42.716

100

0.427
  pilC Vibrio campbellii strain DS40M4

40.657

97.778

0.398
  pilC Thermus thermophilus HB27

37.905

99.012

0.375