Detailed information NTG0539365

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: JVX91_RS10290
• Genome accession: NZ_CP070356
• Coordinates: 2208496..2209368 (-)
• Length: 290 a.a.
• NCBI ID: WP_205339128.1
• Uniprot ID: -
• Organism: Pseudomonas sp. PDNC002
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2203496..2214368

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JVX91_RS10250 (JVX91_10250)	-	2203737..2205035 (-)	1299	WP_205339122.1	NAD(P)/FAD-dependent oxidoreductase	-
JVX91_RS10255 (JVX91_10255)	-	2205089..2205259 (-)	171	WP_037011479.1	DUF3094 domain-containing protein	-
JVX91_RS10260 (JVX91_10260)	-	2205354..2205983 (-)	630	WP_205339123.1	DUF1780 domain-containing protein	-
JVX91_RS10265 (JVX91_10265)	-	2206104..2206538 (+)	435	WP_205339977.1	FAD/FMN-containing dehydrogenase	-
JVX91_RS10270 (JVX91_10270)	-	2206535..2207224 (+)	690	WP_205339124.1	energy-coupling factor ABC transporter permease	-
JVX91_RS10275 (JVX91_10275)	-	2207332..2207547 (+)	216	WP_205339125.1	hypothetical protein	-
JVX91_RS10280 (JVX91_10280)	yacG	2207622..2207825 (-)	204	WP_205339126.1	DNA gyrase inhibitor YacG	-
JVX91_RS10285 (JVX91_10285)	coaE	2207822..2208430 (-)	609	WP_205339127.1	dephospho-CoA kinase	-
JVX91_RS10290 (JVX91_10290)	pilD	2208496..2209368 (-)	873	WP_205339128.1	A24 family peptidase	Machinery gene
JVX91_RS10295 (JVX91_10295)	pilC	2209372..2210589 (-)	1218	WP_205339129.1	type II secretion system F family protein	Machinery gene
JVX91_RS10300 (JVX91_10300)	pilB	2210593..2212296 (-)	1704	WP_205339130.1	type IV-A pilus assembly ATPase PilB	Machinery gene
JVX91_RS10305 (JVX91_10305)	pilA	2212522..2212947 (+)	426	WP_205339978.1	pilin	Machinery gene

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31907.89 Da
• Isoelectric Point: 6.6214

>NTDB_id=539365 JVX91_RS10290 WP_205339128.1 2208496..2209368(-) (pilD) [Pseudomonas sp. PDNC002]
MPVVDFLASTPLAFVLCVTLLGLLVGSFLNVVIHRLPKMMELSWQREAREALNLPDEEPKGTYNLILPNSQCPHCAHEIK
PWENIPVVSWLALGGKCSSCKAPISKRYPLVELACGVLSAFIAWHYGFGWQAGAMLVLTWGLLAMSMIDVDHQLLPDALV
LPLLWLGLIVNYFGLFASLGDALWGAVFGYLSLWSVYWLFKLITGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSLVG
AVLGIITLRLRNAETSTPIPFGPYLAIAGWIALLWGDQITATYLQFAGFR

Nucleotide

• Length: 873 bp

>NTDB_id=539365 JVX91_RS10290 WP_205339128.1 2208496..2209368(-) (pilD) [Pseudomonas sp. PDNC002]
ATGCCTGTCGTCGACTTCCTGGCCAGCACCCCGCTGGCCTTTGTTTTGTGCGTAACGCTGCTCGGCCTGCTGGTCGGCAG
CTTCCTCAATGTGGTGATCCATCGGCTTCCGAAGATGATGGAGCTCAGTTGGCAGCGTGAAGCGCGCGAGGCGCTGAACT
TGCCGGACGAAGAGCCGAAGGGTACCTACAACCTCATTCTCCCTAACTCCCAGTGCCCGCACTGCGCTCACGAGATCAAG
CCCTGGGAGAACATCCCGGTGGTCAGTTGGCTGGCGCTGGGCGGCAAGTGTTCGTCCTGCAAGGCGCCGATCAGCAAGCG
CTATCCATTGGTGGAGCTGGCTTGCGGTGTCCTGTCAGCCTTCATCGCCTGGCACTACGGCTTCGGCTGGCAGGCCGGGG
CGATGCTGGTGCTGACCTGGGGCTTGCTGGCGATGAGCATGATCGACGTCGATCACCAGTTGCTACCGGACGCCCTGGTG
CTGCCGCTGCTCTGGCTGGGACTGATCGTCAACTACTTCGGCCTGTTCGCCAGTCTGGGCGATGCGCTCTGGGGCGCGGT
ATTCGGCTACCTGAGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGATCACTGGCAAGGAGGGCATGGGTTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGCGCCTGGGGTGGCTGGCAGGTATTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGT
GCGGTGCTGGGCATTATTACCCTGCGCCTGCGCAACGCCGAGACCAGTACGCCGATCCCCTTCGGTCCCTATCTGGCCAT
TGCCGGCTGGATTGCGCTGCTCTGGGGTGATCAAATAACCGCGACCTATCTGCAGTTCGCCGGTTTCCGCTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.115	95.862	0.538
pilD	Vibrio campbellii strain DS40M4	55.435	95.172	0.528
pilD	Acinetobacter baumannii D1279779	52.113	97.931	0.51
pilD	Acinetobacter nosocomialis M2	51.408	97.931	0.503
pilD	Neisseria gonorrhoeae MS11	50.181	95.517	0.479